Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AC789_RS05065 Genome accession   NZ_CP010315
Coordinates   1058337..1058966 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 789     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1053337..1063966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC789_RS05040 (AC789_1c09950) ycbZ 1053726..1055486 (-) 1761 WP_000156526.1 Lon protease family protein -
  AC789_RS05045 (AC789_1c09960) matP 1055672..1056124 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AC789_RS05050 (AC789_1c09970) ompA 1056200..1057252 (-) 1053 WP_001361736.1 porin OmpA -
  AC789_RS05060 (AC789_1c09980) sulA 1057609..1058118 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AC789_RS05065 (AC789_1c09990) sxy/tfoX 1058337..1058966 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AC789_RS05070 (AC789_1c10000) yccS 1058929..1061091 (-) 2163 WP_000875044.1 YccS family putative transporter -
  AC789_RS05075 (AC789_1c10010) yccF 1061101..1061547 (-) 447 WP_044502166.1 YccF domain-containing protein -
  AC789_RS05080 (AC789_1c10020) helD 1061670..1063724 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=136320 AC789_RS05065 WP_000839153.1 1058337..1058966(+) (sxy/tfoX) [Escherichia coli strain 789]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=136320 AC789_RS05065 WP_000839153.1 1058337..1058966(+) (sxy/tfoX) [Escherichia coli strain 789]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment