Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC17_RS05265 Genome accession   NZ_CP012739
Coordinates   1129328..1129804 (-) Length   158 a.a.
NCBI ID   WP_039554189.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124328..1134804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS05230 (FORC17_0979) - 1124599..1126080 (-) 1482 WP_039554198.1 hypothetical protein -
  FORC17_RS05235 (FORC17_0980) - 1126077..1126775 (-) 699 WP_039554197.1 hypothetical protein -
  FORC17_RS05240 (FORC17_0981) - 1126881..1127216 (-) 336 WP_039554195.1 hypothetical protein -
  FORC17_RS05245 (FORC17_0982) - 1127357..1127608 (-) 252 WP_039554193.1 hypothetical protein -
  FORC17_RS05250 (FORC17_0983) - 1127638..1128156 (+) 519 WP_072039124.1 ribonuclease HI -
  FORC17_RS05255 (FORC17_0984) - 1128413..1128856 (-) 444 WP_039554191.1 DUF2787 domain-containing protein -
  FORC17_RS05260 - 1128903..1129331 (-) 429 WP_039469218.1 DUF2787 family protein -
  FORC17_RS05265 (FORC17_0986) radC 1129328..1129804 (-) 477 WP_039554189.1 RadC family protein Machinery gene
  FORC17_RS05270 (FORC17_0987) - 1129924..1130130 (+) 207 WP_072599938.1 AlpA family transcriptional regulator -
  FORC17_RS05275 (FORC17_0988) - 1130263..1133625 (+) 3363 WP_039554186.1 DEAD/DEAH box helicase -
  FORC17_RS05280 (FORC17_0989) - 1133971..1134759 (-) 789 WP_039554183.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18025.44 Da        Isoelectric Point: 6.3819

>NTDB_id=136251 FORC17_RS05265 WP_039554189.1 1129328..1129804(-) (radC) [Vibrio vulnificus strain FORC_017]
MSQFLRYGSLLPQKEYEHRVLEEAAEILKDRYVRGDAFSSPAATSDYLRFKLARYEHEVFAVMFLDNQHRLIEFKELFRG
TVDSASVYPREVVKEALHVNAAAVIFAHNHPSGDPEPSQSDKRITGRLKEALSLVDIRVLDHFVVGDSCVSFTERGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=136251 FORC17_RS05265 WP_039554189.1 1129328..1129804(-) (radC) [Vibrio vulnificus strain FORC_017]
ATGTCTCAATTTCTCCGTTACGGTAGTTTGTTACCTCAAAAAGAATATGAGCACCGAGTGCTCGAAGAAGCCGCTGAAAT
ACTCAAAGATCGTTATGTTCGTGGTGATGCGTTTTCAAGTCCCGCGGCAACCTCAGATTACTTACGCTTCAAATTGGCAA
GGTATGAACATGAAGTTTTCGCGGTCATGTTCTTAGACAATCAGCACCGCTTGATTGAGTTTAAAGAGCTGTTTCGTGGC
ACGGTTGATTCCGCAAGCGTTTATCCTCGCGAAGTAGTAAAAGAAGCGCTGCACGTTAACGCCGCTGCGGTGATCTTCGC
CCATAACCATCCTTCCGGCGATCCTGAACCATCACAATCGGACAAACGGATCACTGGACGTTTAAAAGAAGCGCTCTCGC
TGGTGGACATTCGAGTTCTTGATCATTTCGTGGTGGGTGACAGTTGCGTCTCATTTACTGAGAGGGGGTTGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50.694

91.139

0.462