Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RP72_RS00240 Genome accession   NZ_CP010314
Coordinates   44815..45138 (-) Length   107 a.a.
NCBI ID   WP_080332445.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39815..50138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP72_RS00200 (RP72_00200) darA 39871..40200 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  RP72_RS00205 (RP72_00205) yaaR 40213..40653 (+) 441 WP_009966249.1 YaaR family protein -
  RP72_RS00210 (RP72_00210) holB 40665..41654 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  RP72_RS00215 (RP72_00215) ricT 41657..42484 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  RP72_RS00220 (RP72_00220) yabA 42499..42858 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  RP72_RS00225 (RP72_00225) trmNF 42917..43660 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RP72_RS00230 (RP72_00230) yazA 43647..43946 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  RP72_RS00235 (RP72_00235) rsmI 43921..44799 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RP72_RS00240 (RP72_00240) abrB 44815..45138 (-) 324 WP_080332445.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RP72_RS00245 (RP72_00245) metG 45633..47627 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  RP72_RS00250 (RP72_00250) dayD 47706..48473 (+) 768 WP_003226756.1 TatD family hydrolase -
  RP72_RS00255 (RP72_00255) yabE 48629..49942 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12078.24 Da        Isoelectric Point: 8.9351

>NTDB_id=136235 RP72_RS00240 WP_080332445.1 44815..45138(-) (abrB) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLKKSFLVQKTFLL

Nucleotide


Download         Length: 324 bp        

>NTDB_id=136235 RP72_RS00240 WP_080332445.1 44815..45138(-) (abrB) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAAAAATCATTTCTTGTACAAAAAACGTTCTTGTT
ATGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

89.72

0.897

Multiple sequence alignment