Detailed information NTG0136198

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RO07_RS02640
• Genome accession: NZ_CP010310
• Coordinates: 593669..594988 (-)
• Length: 439 a.a.
• NCBI ID: WP_039407829.1
• Uniprot ID: A0AAJ5D0H0
• Organism: Pandoraea pulmonicola strain DSM 16583
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 588669..599988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RO07_RS02615 (RO07_11085)	rpoH	589237..590175 (-)	939	WP_039407819.1	RNA polymerase sigma factor RpoH	-
RO07_RS02620 (RO07_11090)	-	590398..590781 (+)	384	WP_039407821.1	nuclear transport factor 2 family protein	-
RO07_RS02625 (RO07_11095)	ybiB	591093..592046 (-)	954	WP_039407823.1	DNA-binding protein YbiB	-
RO07_RS02630 (RO07_11100)	maiA	592239..592886 (+)	648	WP_039407825.1	maleylacetoacetate isomerase	-
RO07_RS02635 (RO07_11105)	-	592895..593521 (+)	627	WP_039407827.1	LysE/ArgO family amino acid transporter	-
RO07_RS02640 (RO07_11110)	pilA	593669..594988 (-)	1320	WP_039407829.1	signal recognition particle-docking protein FtsY	Machinery gene
RO07_RS02645 (RO07_11115)	-	595160..596578 (+)	1419	WP_039407831.1	M16 family metallopeptidase	-
RO07_RS02650 (RO07_11120)	-	596612..598015 (+)	1404	WP_052267508.1	M16 family metallopeptidase	-
RO07_RS02655 (RO07_11125)	-	598055..598843 (-)	789	WP_052266962.1	ABC transporter permease	-
RO07_RS02660 (RO07_11130)	nodI	598836..599753 (-)	918	WP_039407833.1	nodulation factor ABC transporter ATP-binding protein NodI	-

Sequence

Protein

• Length: 439 a.a.
• Molecular weight: 45729.92 Da
• Isoelectric Point: 5.0850

>NTDB_id=136198 RO07_RS02640 WP_039407829.1 593669..594988(-) (pilA) [Pandoraea pulmonicola strain DSM 16583]
MFSFFKRFKSGGNKAAETSPASPESVESTDSAQPAQATEPTAPAATAGDAKANVASPASHQSTAPTAPATPATPTVSEPV
QSAAENTEASDSISAQIPTPDASTTSEPVDVAPPPAPVVVKDAQGETIGEIVAAPAPAPAAKRSWLTRLKTGLSKTSAGL
TGIFVGVKVDENLFEELEGALLMSDAGVEATTFLLDALRKKVKAERLTEGEQVKRALHDLLVELLQPLEQSLVLGREAPL
VVMIAGVNGAGKTTSIGKLAKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVAVVSQESGDPAAVVFDAVNAARARR
IDIVMADTAGRLPTQLHLMEELKKIRRVLGKAAEGAPHEVLLVIDANTGQNALAQVKAFDDALQLTGLIVTKLDGTAKGG
ILAAIARQRPVPVYFIGVGEKVEDLQPFSAREFADALLG

Nucleotide

• Length: 1320 bp

>NTDB_id=136198 RO07_RS02640 WP_039407829.1 593669..594988(-) (pilA) [Pandoraea pulmonicola strain DSM 16583]
ATGTTCAGTTTCTTCAAGCGCTTCAAGTCGGGCGGCAACAAGGCCGCCGAGACGAGTCCCGCATCGCCAGAATCCGTCGA
GTCGACCGACTCGGCTCAGCCGGCCCAGGCCACCGAACCGACGGCGCCTGCTGCCACCGCGGGCGACGCAAAGGCGAACG
TCGCATCGCCCGCGTCCCATCAATCCACCGCGCCCACCGCCCCCGCCACACCTGCGACGCCGACGGTGAGCGAGCCGGTG
CAAAGCGCCGCCGAAAACACGGAAGCGTCCGACTCCATTTCGGCCCAAATCCCAACGCCGGACGCATCGACCACGTCAGA
ACCGGTGGACGTCGCACCACCGCCCGCGCCCGTCGTCGTGAAGGACGCGCAAGGTGAAACCATCGGCGAAATCGTCGCCG
CCCCGGCCCCCGCGCCGGCCGCCAAGCGCTCGTGGCTCACGCGCCTGAAGACCGGTCTGTCGAAGACCAGCGCCGGCCTC
ACGGGCATCTTCGTCGGCGTGAAGGTCGACGAGAATCTCTTCGAGGAACTCGAAGGCGCCCTGCTGATGAGCGACGCGGG
CGTCGAAGCCACCACCTTCCTCCTCGACGCGCTGCGCAAGAAGGTCAAGGCCGAACGCCTGACCGAAGGCGAACAGGTCA
AGCGCGCGTTGCACGATCTGCTGGTCGAACTGCTGCAACCGCTCGAGCAGAGCCTCGTGCTCGGCCGCGAAGCGCCGCTG
GTCGTGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTGGCCAAGCACTTTCAGCATTACGG
GCAGTCGGTGCTGCTCGCCGCCGGCGACACGTTCCGCGCGGCGGCTCGCGAGCAGTTGACGATCTGGGGCGAGCGTAACA
ACGTGGCGGTCGTCTCGCAGGAAAGCGGCGATCCGGCGGCGGTCGTCTTCGACGCCGTCAACGCGGCACGGGCGCGCAGG
ATCGATATCGTGATGGCCGACACGGCAGGCCGCCTGCCGACGCAGTTGCATCTGATGGAGGAGCTCAAGAAGATCAGGCG
CGTGCTTGGCAAGGCCGCCGAGGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCCAACACCGGCCAGAACGCGCTCG
CGCAGGTCAAGGCGTTCGACGACGCGCTGCAACTCACCGGCCTCATCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGC
ATTCTTGCCGCGATCGCACGCCAGCGTCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGGTCGAGGATCTGCAACC
GTTCTCCGCACGCGAGTTCGCAGACGCCTTGCTGGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (159-219)

• SRP54-type protein, GTPase domain (SRP54) (240-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.693	100	0.522