Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AN924_RS05185 Genome accession   NZ_CP012731
Coordinates   1030730..1031512 (-) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain 90-1330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025730..1036512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN924_RS11220 (AN924_10840) purC 1028660..1029367 (-) 708 WP_002935328.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AN924_RS05175 (AN924_10850) - 1029485..1029733 (-) 249 WP_002935333.1 phosphopantetheine-binding protein -
  AN924_RS05180 (AN924_10860) plsX 1029726..1030733 (-) 1008 WP_002935334.1 phosphate acyltransferase PlsX -
  AN924_RS05185 (AN924_10880) recO 1030730..1031512 (-) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  AN924_RS05190 (AN924_10890) - 1031499..1032677 (-) 1179 WP_002935336.1 pyridoxal phosphate-dependent aminotransferase -
  AN924_RS05195 (AN924_10900) - 1032768..1033733 (-) 966 WP_062897079.1 ribose-phosphate diphosphokinase -
  AN924_RS05200 (AN924_10910) pcsB 1033836..1035092 (-) 1257 WP_002935338.1 peptidoglycan hydrolase PcsB -
  AN924_RS05205 (AN924_10920) mreD 1035177..1035692 (-) 516 WP_002935339.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=136169 AN924_RS05185 WP_002935335.1 1030730..1031512(-) (recO) [Streptococcus suis strain 90-1330]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=136169 AN924_RS05185 WP_002935335.1 1030730..1031512(-) (recO) [Streptococcus suis strain 90-1330]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673