Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   PJ17_RS07720 Genome accession   NZ_CP010306
Coordinates   1503895..1504206 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain 00-1597     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498895..1509206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ17_RS07700 (PJ17_07700) ctsE 1499764..1501323 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  PJ17_RS07705 (PJ17_07705) ctsX 1501313..1501900 (-) 588 WP_002851370.1 membrane protein Machinery gene
  PJ17_RS07710 (PJ17_07710) ctsP 1501904..1502512 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  PJ17_RS07715 (PJ17_07715) ctsD 1502505..1503917 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  PJ17_RS07720 (PJ17_07720) ctsR 1503895..1504206 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  PJ17_RS07725 (PJ17_07725) nifJ 1504230..1507790 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  PJ17_RS07730 (PJ17_07730) - 1507882..1508523 (-) 642 WP_002858866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=136163 PJ17_RS07720 WP_002855438.1 1503895..1504206(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 00-1597]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=136163 PJ17_RS07720 WP_002855438.1 1503895..1504206(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 00-1597]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment