Detailed information NTG0136143

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AN924_RS03355
• Genome accession: NZ_CP012731
• Coordinates: 678057..680156 (-)
• Length: 699 a.a.
• NCBI ID: WP_013730153.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 90-1330
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 673057..685156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN924_RS03340 (AN924_07060)	-	673176..673883 (+)	708	WP_004194205.1	UTRA domain-containing protein	-
AN924_RS03345 (AN924_07070)	glgP	674110..676374 (-)	2265	WP_004194208.1	glycogen/starch/alpha-glucan family phosphorylase	-
AN924_RS03350 (AN924_07080)	malQ	676367..677875 (-)	1509	WP_004194210.1	4-alpha-glucanotransferase	-
AN924_RS03355 (AN924_07090)	clpC	678057..680156 (-)	2100	WP_013730153.1	AAA family ATPase	Regulator
AN924_RS03360 (AN924_07100)	-	680571..680981 (-)	411	WP_004194216.1	peptide deformylase	-
AN924_RS03365 (AN924_07110)	-	681001..682380 (-)	1380	WP_013730152.1	P-loop NTPase fold protein	-
AN924_RS03370 (AN924_07120)	-	682440..682820 (-)	381	WP_002935135.1	TipAS antibiotic-recognition domain-containing protein	-
AN924_RS03375 (AN924_07130)	-	682822..683910 (-)	1089	WP_002935136.1	nucleotidyltransferase	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77218.10 Da
• Isoelectric Point: 4.8576

>NTDB_id=136143 AN924_RS03355 WP_013730153.1 678057..680156(-) (clpC) [Streptococcus suis strain 90-1330]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
GFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=136143 AN924_RS03355 WP_013730153.1 678057..680156(-) (clpC) [Streptococcus suis strain 90-1330]
ATGAACAACAATTTCAATAATTTTAACAATATGGACGATATTTTCAATCAACTTATGGGGAACATGGGTGGATACAGTAC
AGAACGACGTCGCTATTCTATCAATGGGCGTGAAGTGACACCGGAGGAATTCGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACCGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGATGGGATTCTTGCAAAACTGGGGCGCAAT
TTGACCCAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACAGCGGAAATTTT
GGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTTGGTAAAACTGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAACGGAGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATTGACATTTCTGGCTTGGAGGCA
GGGACCCAGTACCGTGGAGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACCATTCATAAG
AACGCCGCACTGGCTCGTCGTTTCAATGAAGTCAAGGTTAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCTGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGATCGATGTGACCGCTGCACACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTGGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCGGCTGAGAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCTAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGATGGCAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGCTGGCTAAGCAACTAGCACTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGTGTCCGCCGCAATCCGTACTCAATCGTTCTTCTGGATGAGATTGAAAAAGCTGATCCACAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGACGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGTATCGCACC
ATTCTTCCGTCCGGAGTTCCTTAATCGTTTTAACGCAGTTATCGAATTCAAGCACTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCCGCCAAA
GGATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGTCGTGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA lid domain (AAA_lid_9) (257-351)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.234	100	0.476
clpE	Streptococcus pneumoniae Rx1	49.689	92.132	0.458
clpE	Streptococcus pneumoniae D39	49.689	92.132	0.458
clpE	Streptococcus pneumoniae R6	49.689	92.132	0.458
clpE	Streptococcus pneumoniae TIGR4	49.689	92.132	0.458
clpE	Streptococcus mutans UA159	49.61	91.702	0.455
clpC	Bacillus subtilis subsp. subtilis str. 168	44.737	92.418	0.413
clpC	Streptococcus pneumoniae Rx1	41.617	95.565	0.398
clpC	Streptococcus pneumoniae D39	41.617	95.565	0.398
clpC	Streptococcus pneumoniae TIGR4	41.379	95.422	0.395
clpC	Streptococcus mutans UA159	43.366	88.412	0.383
clpC	Streptococcus thermophilus LMD-9	42.72	89.413	0.382
clpC	Streptococcus thermophilus LMG 18311	42.56	89.413	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.834	88.841	0.381