Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   PJ16_RS08100 Genome accession   NZ_CP010301
Coordinates   1516920..1517237 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni subsp. jejuni strain 00-0949     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511920..1522237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ16_RS08080 (PJ16_08080) ctsE 1512789..1514348 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  PJ16_RS08085 (PJ16_08085) ctsX 1514338..1514925 (-) 588 WP_002851370.1 membrane protein Machinery gene
  PJ16_RS08090 (PJ16_08090) ctsP 1514929..1515537 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  PJ16_RS08095 (PJ16_08095) ctsD 1515530..1516948 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  PJ16_RS08100 (PJ16_08100) ctsR 1516920..1517237 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  PJ16_RS08105 (PJ16_08105) nifJ 1517261..1520821 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  PJ16_RS08110 (PJ16_08110) - 1520914..1521555 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=136114 PJ16_RS08100 WP_002851255.1 1516920..1517237(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 00-0949]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=136114 PJ16_RS08100 WP_002851255.1 1516920..1517237(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 00-0949]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment