Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SanJ4206_RS06885 Genome accession   NZ_CP012719
Coordinates   1428250..1429908 (-) Length   552 a.a.
NCBI ID   WP_003030165.1    Uniprot ID   A0ABD7NFD2
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423250..1434908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS06855 (SanJ4206_1327) - 1423635..1424051 (+) 417 Protein_1315 iron chelate uptake ABC transporter family permease subunit -
  SanJ4206_RS06860 (SanJ4206_1328c) - 1424070..1425005 (-) 936 Protein_1316 IS30 family transposase -
  SanJ4206_RS06865 (SanJ4206_1329) - 1425101..1425658 (+) 558 Protein_1317 iron chelate uptake ABC transporter family permease subunit -
  SanJ4206_RS06870 (SanJ4206_1330) - 1425660..1426412 (+) 753 WP_003030160.1 ABC transporter ATP-binding protein -
  SanJ4206_RS06875 (SanJ4206_1331) - 1426436..1427410 (+) 975 WP_022525051.1 siderophore ABC transporter substrate-binding protein -
  SanJ4206_RS06880 (SanJ4206_1332c) - 1427473..1428203 (-) 731 Protein_1320 metallophosphoesterase -
  SanJ4206_RS06885 (SanJ4206_1333c) recN 1428250..1429908 (-) 1659 WP_003030165.1 DNA repair protein RecN Machinery gene
  SanJ4206_RS06890 (SanJ4206_1334c) - 1429916..1430347 (-) 432 WP_003030168.1 arginine repressor -
  SanJ4206_RS06895 (SanJ4206_1335c) - 1430340..1431155 (-) 816 WP_003030170.1 TlyA family RNA methyltransferase -
  SanJ4206_RS06900 (SanJ4206_1336c) - 1431121..1432023 (-) 903 WP_022525053.1 polyprenyl synthetase family protein -
  SanJ4206_RS06905 (SanJ4206_1337c) - 1432020..1432232 (-) 213 WP_003030175.1 exodeoxyribonuclease VII small subunit -
  SanJ4206_RS06910 (SanJ4206_1338c) xseA 1432210..1433550 (-) 1341 WP_003030178.1 exodeoxyribonuclease VII large subunit -
  SanJ4206_RS09960 (SanJ4206_1339c) - 1433678..1433995 (-) 318 WP_003030181.1 TraX family protein -
  SanJ4206_RS09965 (SanJ4206_1340c) - 1434012..1434482 (-) 471 WP_003030183.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62395.60 Da        Isoelectric Point: 4.4797

>NTDB_id=136084 SanJ4206_RS06885 WP_003030165.1 1428250..1429908(-) (recN) [Streptococcus anginosus strain J4206]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKTEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKAD
YQQIFDQYRQLRKQVLTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANVRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVENRLDLIYSITRKYGGQV
DDVLAYFEQISNEYALLTGKNLSSDDLDKELKKLEKDLVSLASSLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSIVRLLSDEERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=136084 SanJ4206_RS06885 WP_003030165.1 1428250..1429908(-) (recN) [Streptococcus anginosus strain J4206]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACTGTTTT
GACAGGTGAAACAGGGGCCGGAAAGTCTATTATCATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAACAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGACTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGACGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCCGTTGGACAGCATTTGGTGGATATTCACGGTCAGCACGACCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGATGACGCATTTTTCAAGCTCAAAGCGGAT
TATCAACAGATTTTTGACCAGTATCGTCAGTTGCGCAAGCAGGTCTTGACGATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAGATTGCAGAGATTGAAGCAGCTAATTTAAAAGCAGGTGAAGATTTAGCTTTAAATC
AAGAACGTGATAAGTTGCTCAATCATAAGCAGATTGCGGACACTTTGACCAATGCTTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCAAATGTTCGATCTGCCATGAATGACATGGAAGCTATTGAAGACTACGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAATCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCCTAGCTTATTTTGAGCAGATTTCTAACGAATATGCTCTACTTACTGGGAAAAATCTTTCATCAGATGATTT
GGACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAAGCAGTCTTAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAA
GGAAAATTTAGTCGTGAAGGAAATGAACACGTTGAATTTTATATTTCGACCAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGAGGTGAATTGTCTCGTTTGATGTTGGCAATCAAATCTGCTTTTTCTCGTAAGGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGACACAGGCGTATCGGGACGTGTTGCACAAGCTATTGCTCAAAAGATTCATAAAATTGGC
TCAAACGGACAAGTCCTCGCAATTTCGCACTTGCCACAAGTGATTGCCATTGCGGATTATCAATTTTTCATTGAGAAAAT
ATCTGATGAACATTCGACTGTTTCAATTGTTCGCTTGTTATCAGATGAGGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGTGAAAATGTTACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NFD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.585

100

0.449