Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SanJ4206_RS00220 Genome accession   NZ_CP012719
Coordinates   29093..29866 (+) Length   257 a.a.
NCBI ID   WP_003028752.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24093..34866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS00200 (SanJ4206_0018) mreD 24839..25339 (+) 501 WP_003028742.1 rod shape-determining protein MreD -
  SanJ4206_RS00205 (SanJ4206_0019) pcsB 25449..26672 (+) 1224 WP_003028745.1 peptidoglycan hydrolase PcsB -
  SanJ4206_RS00210 (SanJ4206_0020) - 26805..27773 (+) 969 WP_022525464.1 ribose-phosphate diphosphokinase -
  SanJ4206_RS00215 (SanJ4206_0021) - 27928..29115 (+) 1188 WP_003028750.1 pyridoxal phosphate-dependent aminotransferase -
  SanJ4206_RS00220 (SanJ4206_0022) recO 29093..29866 (+) 774 WP_003028752.1 DNA repair protein RecO Machinery gene
  SanJ4206_RS00225 (SanJ4206_0023) plsX 29863..30861 (+) 999 WP_003028754.1 phosphate acyltransferase PlsX -
  SanJ4206_RS00230 (SanJ4206_0024) - 30858..31103 (+) 246 WP_003028756.1 acyl carrier protein -
  SanJ4206_RS00235 (SanJ4206_0025) purC 31263..31970 (+) 708 WP_003028757.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29995.49 Da        Isoelectric Point: 6.6917

>NTDB_id=136008 SanJ4206_RS00220 WP_003028752.1 29093..29866(+) (recO) [Streptococcus anginosus strain J4206]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERRSHLDPNIPYLLDQFQAVQFSELENISLKPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGKILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=136008 SanJ4206_RS00220 WP_003028752.1 29093..29866(+) (recO) [Streptococcus anginosus strain J4206]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGGAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGATGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTATTTATTAGACCAATTTCAAGCGGTTCAATTTAGTGAATTGGAGAACATTTCTTTGAAGCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAAAAATTTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-75)

Recombination protein O C terminal (RecO_C)

(84-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747

Multiple sequence alignment