Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOD58_RS05930 Genome accession   NZ_CP012696
Coordinates   1129799..1130293 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain RM1285     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124799..1135293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOD58_RS05915 (AOD58_05910) - 1126185..1127363 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  AOD58_RS05920 (AOD58_05915) gpsA 1127373..1128269 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AOD58_RS05925 (AOD58_05920) gatB 1128266..1129684 (-) 1419 WP_002858123.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AOD58_RS05930 (AOD58_05925) luxS 1129799..1130293 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  AOD58_RS05935 (AOD58_05930) - 1130605..1131597 (+) 993 WP_002858100.1 isopenicillin N synthase family dioxygenase -
  AOD58_RS05940 (AOD58_05935) - 1131608..1132378 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AOD58_RS05945 (AOD58_05940) metE 1132390..1134654 (+) 2265 WP_002903924.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=135987 AOD58_RS05930 WP_002857890.1 1129799..1130293(+) (luxS) [Campylobacter jejuni strain RM1285]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=135987 AOD58_RS05930 WP_002857890.1 1129799..1130293(+) (luxS) [Campylobacter jejuni strain RM1285]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707