Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AOD58_RS03150 Genome accession   NZ_CP012696
Coordinates   598833..599216 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593833..604216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOD58_RS03130 (AOD58_03130) - 593912..595846 (-) 1935 WP_002890708.1 RNB domain-containing ribonuclease -
  AOD58_RS03135 (AOD58_03135) ilvC 595965..596987 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  AOD58_RS03140 (AOD58_03140) - 596991..598073 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  AOD58_RS03145 (AOD58_03145) dprA 598063..598836 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  AOD58_RS03150 (AOD58_03150) dprB 598833..599216 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  AOD58_RS03155 (AOD58_03155) - 599245..600084 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AOD58_RS03160 (AOD58_03160) msrA 600260..600757 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AOD58_RS03165 (AOD58_03165) ppa 600798..601316 (-) 519 WP_002867724.1 inorganic diphosphatase -
  AOD58_RS03170 (AOD58_03170) adk 601326..601904 (-) 579 WP_002859580.1 adenylate kinase -
  AOD58_RS03175 (AOD58_03175) aspS 601901..603652 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=135973 AOD58_RS03150 WP_002858579.1 598833..599216(+) (dprB) [Campylobacter jejuni strain RM1285]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=135973 AOD58_RS03150 WP_002858579.1 598833..599216(+) (dprB) [Campylobacter jejuni strain RM1285]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449