Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AN159_RS11285 Genome accession   NZ_CP012694
Coordinates   2168957..2171146 (+) Length   729 a.a.
NCBI ID   WP_002245945.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2163957..2176146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS11265 (AN159_11280) - 2164141..2164530 (-) 390 WP_002245941.1 type IV pilin protein -
  AN159_RS11270 (AN159_11285) - 2164756..2165934 (+) 1179 WP_002245942.1 MacA family efflux pump subunit -
  AN159_RS11275 (AN159_11290) - 2166000..2167934 (+) 1935 WP_002245943.1 MacB family efflux pump subunit -
  AN159_RS11280 (AN159_11295) - 2168036..2168818 (-) 783 WP_002245944.1 DsbC family protein -
  AN159_RS11285 (AN159_11300) priA 2168957..2171146 (+) 2190 WP_002245945.1 primosomal protein N' Machinery gene
  AN159_RS11290 (AN159_11305) - 2171192..2172265 (-) 1074 WP_069972651.1 NnrS family protein -
  AN159_RS11295 (AN159_11310) - 2172313..2173152 (-) 840 Protein_2118 IS110 family transposase -
  AN159_RS11300 (AN159_11315) - 2173290..2174193 (-) 904 Protein_2119 IS5 family transposase -
  AN159_RS13985 - 2174256..2174390 (-) 135 Protein_2120 IS110 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81087.90 Da        Isoelectric Point: 8.0459

>NTDB_id=135960 AN159_RS11285 WP_002245945.1 2168957..2171146(+) (priA) [Neisseria meningitidis strain 331401]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILSVQTAFVEEKPLPQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
VKLIENWAEQGWIETTEAAKPVLRSCHGQASHSEFVLNADQRQASDAIQTALGRFRPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPVPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLASLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=135960 AN159_RS11285 WP_002245945.1 2168957..2171146(+) (priA) [Neisseria meningitidis strain 331401]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATACGGCGCGGATTTTGAGTGTTCAGACGGCCTTTGTAGAAGAAAAGCCGTTACCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACTGGGCAGGCGGTGTTTGCCGCGCTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTACGCGCTGAACGAAGCAGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCAGCGTTGAAGCAGGTAAACGCGCAGGCG
GTGAAATTAATCGAAAATTGGGCGGAACAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTGCCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCGACCAACGGCAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCGGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTCATCGGCACGCGGCTGGCGGTGTTCACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAGGACAACGAATTGCGCTACCACGCCCGCGATTTAGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCCGTTGTGTTGGGCAGCGCGACCCCGAGTTTGGAAAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATCCTCAACGTAGGCCGTCTGAAACTCGAT
AACGGCTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGTTGGTGTACCTCAACCG
TCGCGGCTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCGTCCCGTTCAAATGCCCCGACTGCGGC
AACCAAGATCTGACCGCCGTCGGACACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATTGCCGACAACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTCGCCAAAGGGCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCAGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCTGTCTTCGCCGCCGTCAAAGCGCAAGACT
ATGCCGTGTTTGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGCGTTGCCGATGCGATGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCTCGCTGTTGCCCGAAAG
CGTTTCCCAGTTCGGCGCGGCCCCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCGA
CATCCCGACAGGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGTAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

DEAD/DEAH box helicase (DEAD)

(206-361)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.425

100

0.372

Multiple sequence alignment