Detailed information NTG0135880

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FORC28_RS28265
• Genome accession: NZ_CP012693
• Coordinates: 5450206..5451231 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain FORC_028
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5445206..5456231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC28_RS28255 (FORC28_5829)	rpmE	5447437..5447649 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
FORC28_RS28260 (FORC28_5831)	priA	5447852..5450050 (+)	2199	WP_001341957.1	primosomal protein N'	Machinery gene
FORC28_RS28265 (FORC28_5832)	cytR	5450206..5451231 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
FORC28_RS28270 (FORC28_5833)	ftsN	5451323..5452282 (+)	960	WP_000068834.1	cell division protein FtsN	-
FORC28_RS28275 (FORC28_5834)	hslV	5452375..5452905 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
FORC28_RS28280 (FORC28_5835)	hslU	5452915..5454246 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
FORC28_RS28285 (FORC28_5836)	menA	5454313..5455239 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FORC28_RS28290 (FORC28_5837)	rraA	5455332..5455817 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
FORC28_RS28295 (FORC28_5838)	zapB	5455902..5456147 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=135880 FORC28_RS28265 WP_000644904.1 5450206..5451231(+) (cytR) [Escherichia coli strain FORC_028]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=135880 FORC28_RS28265 WP_000644904.1 5450206..5451231(+) (cytR) [Escherichia coli strain FORC_028]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628