Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC28_RS25855 Genome accession   NZ_CP012693
Coordinates   4955054..4955530 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4950054..4960530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC28_RS34770 - 4950224..4950727 (+) 504 Protein_5036 sialate O-acetylesterase -
  FORC28_RS34775 - 4951060..4951149 (-) 90 WP_418267963.1 hypothetical protein -
  FORC28_RS25815 (FORC28_5322) - 4951149..4951799 (-) 651 WP_001037966.1 HNH endonuclease -
  FORC28_RS34320 - 4951936..4952085 (+) 150 Protein_5039 restriction endonuclease -
  FORC28_RS34560 - 4952743..4952871 (-) 129 Protein_5040 transcriptional regulator -
  FORC28_RS33805 (FORC28_5325) - 4952847..4952996 (-) 150 Protein_5041 restriction endonuclease subunit M -
  FORC28_RS25825 (FORC28_5326) - 4953081..4953278 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  FORC28_RS25830 (FORC28_5327) - 4953290..4953778 (-) 489 WP_000777547.1 DUF5983 family protein -
  FORC28_RS25835 (FORC28_5328) - 4953775..4954149 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  FORC28_RS25840 (FORC28_5329) - 4954239..4954607 (-) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FORC28_RS25850 (FORC28_5331) - 4954770..4954991 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  FORC28_RS25855 (FORC28_5332) radC 4955054..4955530 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  FORC28_RS25860 (FORC28_5333) - 4955546..4956031 (-) 486 WP_000849588.1 antirestriction protein -
  FORC28_RS25865 (FORC28_5334) - 4956086..4956904 (-) 819 WP_001234622.1 DUF932 domain-containing protein -
  FORC28_RS25870 (FORC28_5335) - 4957004..4957237 (-) 234 WP_001119729.1 DUF905 family protein -
  FORC28_RS25875 (FORC28_5336) - 4957316..4957771 (-) 456 WP_000581504.1 IrmA family protein -
  FORC28_RS25880 (FORC28_5337) - 4957847..4960363 (-) 2517 WP_023442299.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=135872 FORC28_RS25855 WP_001186773.1 4955054..4955530(-) (radC) [Escherichia coli strain FORC_028]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=135872 FORC28_RS25855 WP_001186773.1 4955054..4955530(-) (radC) [Escherichia coli strain FORC_028]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment