Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC28_RS00615 Genome accession   NZ_CP012693
Coordinates   124312..124980 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain FORC_028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119312..129980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC28_RS00585 (FORC28_0135) yicC 119331..120194 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  FORC28_RS00590 (FORC28_0136) rph 120321..121037 (+) 717 WP_001247089.1 ribonuclease PH -
  FORC28_RS00595 (FORC28_0137) pyrE 121103..121744 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  FORC28_RS00600 (FORC28_0138) slmA 121781..122377 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  FORC28_RS00605 (FORC28_0139) dut 122484..122942 (-) 459 WP_000976070.1 dUTP diphosphatase -
  FORC28_RS00610 (FORC28_0140) coaBC 122920..124140 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC28_RS00615 (FORC28_0141) radC 124312..124980 (+) 669 WP_001297375.1 RadC family protein Machinery gene
  FORC28_RS00620 (FORC28_0142) rpmB 125197..125433 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  FORC28_RS00625 (FORC28_0143) rpmG 125454..125621 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  FORC28_RS00630 (FORC28_0144) mutM 125719..126528 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC28_RS00635 (FORC28_0145) coaD 126567..127046 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  FORC28_RS00640 (FORC28_0146) waaA 127054..128331 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  FORC28_RS00645 (FORC28_0147) rfaQ 128744..129802 (+) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=135812 FORC28_RS00615 WP_001297375.1 124312..124980(+) (radC) [Escherichia coli strain FORC_028]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=135812 FORC28_RS00615 WP_001297375.1 124312..124980(+) (radC) [Escherichia coli strain FORC_028]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment