Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEN513_RS11460 Genome accession   NZ_CP010281
Coordinates   2021427..2022032 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Newport str. CVM 22513     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016427..2027032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEN513_RS11445 (SEEN513_009910) helD 2016644..2018698 (-) 2055 WP_000420513.1 DNA helicase IV -
  SEEN513_RS11450 (SEEN513_009915) - 2018822..2019268 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEN513_RS11455 (SEEN513_009920) yccS 2019287..2021440 (+) 2154 WP_000950876.1 YccS family putative transporter -
  SEEN513_RS11460 (SEEN513_009925) sxy/tfoX 2021427..2022032 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEN513_RS11465 (SEEN513_009930) sulA 2022249..2022758 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  SEEN513_RS11470 (SEEN513_009935) ompA 2023115..2024167 (+) 1053 WP_001670727.1 porin OmpA -
  SEEN513_RS11475 (SEEN513_009940) matP 2024239..2024691 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEN513_RS11480 (SEEN513_009945) - 2024877..2026637 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=135733 SEEN513_RS11460 WP_001202375.1 2021427..2022032(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CVM 22513]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=135733 SEEN513_RS11460 WP_001202375.1 2021427..2022032(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CVM 22513]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment