Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CjjRM3196_RS06110 Genome accession   NZ_CP012690
Coordinates   1168394..1168888 (+) Length   164 a.a.
NCBI ID   WP_002853583.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163394..1173888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS06095 (CjjRM3196_1208) - 1164780..1165958 (-) 1179 WP_002854060.1 metal-dependent hydrolase -
  CjjRM3196_RS06100 (CjjRM3196_1209) gpsA 1165968..1166864 (-) 897 WP_074468983.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CjjRM3196_RS06105 (CjjRM3196_1210) gatB 1166861..1168279 (-) 1419 WP_002853911.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CjjRM3196_RS06110 (CjjRM3196_1211) luxS 1168394..1168888 (+) 495 WP_002853583.1 S-ribosylhomocysteine lyase Regulator
  CjjRM3196_RS06115 (CjjRM3196_1212) - 1169199..1170191 (+) 993 WP_002853499.1 isopenicillin N synthase family dioxygenase -
  CjjRM3196_RS06120 (CjjRM3196_1213) - 1170202..1170972 (+) 771 WP_002854059.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CjjRM3196_RS06125 (CjjRM3196_1214) metE 1170984..1173248 (+) 2265 WP_002853777.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18319.27 Da        Isoelectric Point: 6.3290

>NTDB_id=135701 CjjRM3196_RS06110 WP_002853583.1 1168394..1168888(+) (luxS) [Campylobacter jejuni subsp. jejuni strain RM3196]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
FENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=135701 CjjRM3196_RS06110 WP_002853583.1 1168394..1168888(+) (luxS) [Campylobacter jejuni subsp. jejuni strain RM3196]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGCACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGTGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
TTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.807

98.171

0.695

Multiple sequence alignment