Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEN425_RS04670 Genome accession   NZ_CP010279
Coordinates   706410..707015 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Newport str. CVM 22425     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 701410..712015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEN425_RS04650 (SEEN425_003530) - 701805..703565 (-) 1761 WP_000156448.1 AAA family ATPase -
  SEEN425_RS04655 (SEEN425_003535) matP 703751..704203 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEN425_RS04660 (SEEN425_003540) ompA 704275..705327 (-) 1053 WP_001670727.1 porin OmpA -
  SEEN425_RS04665 (SEEN425_003545) sulA 705684..706193 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  SEEN425_RS04670 (SEEN425_003550) sxy/tfoX 706410..707015 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEN425_RS04675 (SEEN425_003555) yccS 707002..709155 (-) 2154 WP_000950876.1 YccS family putative transporter -
  SEEN425_RS04680 (SEEN425_003560) - 709174..709620 (-) 447 WP_001261222.1 YccF domain-containing protein -
  SEEN425_RS04685 (SEEN425_003565) helD 709744..711798 (+) 2055 WP_000420513.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=135681 SEEN425_RS04670 WP_001202375.1 706410..707015(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CVM 22425]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=135681 SEEN425_RS04670 WP_001202375.1 706410..707015(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CVM 22425]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment