Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FORC10_RS20340 Genome accession   NZ_CP010272
Coordinates   4067443..4068792 (+) Length   449 a.a.
NCBI ID   WP_000225361.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_010     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4062443..4073792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC10_RS20320 (FORC10_3852) - 4063547..4064182 (-) 636 WP_000926672.1 YigZ family protein -
  FORC10_RS20325 (FORC10_3853) - 4064419..4065261 (+) 843 WP_000684725.1 DegV family protein -
  FORC10_RS20330 (FORC10_3854) - 4065434..4065748 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  FORC10_RS20335 (FORC10_3855) - 4065903..4067315 (+) 1413 WP_000499475.1 C40 family peptidase -
  FORC10_RS20340 (FORC10_3856) comFA 4067443..4068792 (+) 1350 WP_000225361.1 ATP-dependent helicase ComFA Machinery gene
  FORC10_RS20345 (FORC10_3857) - 4068792..4069493 (+) 702 WP_033687567.1 ComF family protein -
  FORC10_RS20350 (FORC10_3858) cspC 4069620..4069817 (+) 198 WP_001990088.1 cold shock protein CspC -
  FORC10_RS20355 (FORC10_3859) raiA 4070140..4070682 (+) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  FORC10_RS20360 (FORC10_3860) - 4071055..4071528 (+) 474 WP_048558319.1 hypothetical protein -
  FORC10_RS20365 (FORC10_3861) - 4071632..4072201 (+) 570 WP_048558320.1 hypothetical protein -
  FORC10_RS20370 (FORC10_3862) - 4072234..4073022 (+) 789 WP_048558321.1 hypothetical protein -
  FORC10_RS20375 (FORC10_3863) - 4073009..4073704 (+) 696 WP_048558322.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51147.06 Da        Isoelectric Point: 10.0895

>NTDB_id=135661 FORC10_RS20340 WP_000225361.1 4067443..4068792(+) (comFA) [Bacillus cereus strain FORC_010]
MVAGKQLLLEELSSDLQRKLNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECTVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVVALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMHLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTKAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=135661 FORC10_RS20340 WP_000225361.1 4067443..4068792(+) (comFA) [Bacillus cereus strain FORC_010]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGTGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTATTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGCACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAAAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.11

93.096

0.494

Multiple sequence alignment