Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FORC10_RS09045 Genome accession   NZ_CP010272
Coordinates   1833698..1833985 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_010     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828698..1838985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC10_RS09020 (FORC10_1764) - 1829098..1829460 (-) 363 WP_001198796.1 DUF805 domain-containing protein -
  FORC10_RS27220 (FORC10_1765) - 1829604..1829810 (-) 207 WP_001101741.1 hypothetical protein -
  FORC10_RS09025 (FORC10_1766) - 1829859..1831034 (-) 1176 WP_001082492.1 MFS transporter -
  FORC10_RS09030 (FORC10_1767) - 1831082..1832018 (-) 937 Protein_1810 aldo/keto reductase -
  FORC10_RS09035 (FORC10_1768) - 1832125..1832433 (+) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  FORC10_RS09040 (FORC10_1769) - 1832475..1833422 (-) 948 WP_000099746.1 serine protease -
  FORC10_RS09045 (FORC10_1770) abrB 1833698..1833985 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FORC10_RS09050 (FORC10_1771) - 1834102..1835982 (-) 1881 WP_049107625.1 ABC transporter permease -
  FORC10_RS09055 (FORC10_1772) nadE 1836253..1837071 (+) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  FORC10_RS09060 (FORC10_1773) - 1837121..1837582 (-) 462 WP_000024999.1 NUDIX hydrolase -
  FORC10_RS09065 (FORC10_1774) - 1837614..1837811 (-) 198 WP_001048091.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=135634 FORC10_RS09045 WP_000648324.1 1833698..1833985(-) (abrB) [Bacillus cereus strain FORC_010]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=135634 FORC10_RS09045 WP_000648324.1 1833698..1833985(-) (abrB) [Bacillus cereus strain FORC_010]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment