Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RE92_RS15580 Genome accession   NZ_CP010268
Coordinates   3554536..3555489 (+) Length   317 a.a.
NCBI ID   WP_040102839.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain Sb3-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3549536..3560489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE92_RS15565 (RE92_15565) - 3551830..3552507 (-) 678 WP_013373138.1 ABC transporter ATP-binding protein -
  RE92_RS15570 (RE92_15570) - 3552616..3553533 (-) 918 WP_040102838.1 sensor histidine kinase -
  RE92_RS15575 (RE92_15575) - 3553535..3554212 (-) 678 WP_013373136.1 response regulator transcription factor -
  RE92_RS15580 (RE92_15580) ceuB 3554536..3555489 (+) 954 WP_040102839.1 ABC transporter permease Machinery gene
  RE92_RS15585 (RE92_15585) - 3555479..3556429 (+) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  RE92_RS15590 (RE92_15590) - 3556423..3557181 (+) 759 WP_040102840.1 ABC transporter ATP-binding protein -
  RE92_RS15595 (RE92_15595) - 3557194..3558174 (+) 981 WP_040102841.1 siderophore ABC transporter substrate-binding protein -
  RE92_RS15600 (RE92_15600) - 3558208..3558951 (+) 744 WP_040102842.1 alpha/beta hydrolase -
  RE92_RS15605 (RE92_15605) - 3559108..3560019 (+) 912 WP_040102843.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34760.78 Da        Isoelectric Point: 9.9012

>NTDB_id=135613 RE92_RS15580 WP_040102839.1 3554536..3555489(+) (ceuB) [Paenibacillus polymyxa strain Sb3-1]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLISMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=135613 RE92_RS15580 WP_040102839.1 3554536..3555489(+) (ceuB) [Paenibacillus polymyxa strain Sb3-1]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATTATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGCCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGATCAGTATGTACATGGGGGATAATCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment