Detailed information NTG0135550

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOD73_RS07280
• Genome accession: NZ_CP012679
• Coordinates: 1532407..1533411 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA1RG
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1527407..1538411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOD73_RS07250 (AOD73_07265)	fghA	1527499..1528350 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
AOD73_RS07255 (AOD73_07270)	ispF	1528421..1528894 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOD73_RS07260 (AOD73_07275)	truD	1528891..1529958 (+)	1068	WP_023517893.1	tRNA pseudouridine(13) synthase TruD	-
AOD73_RS07265 (AOD73_07280)	surE	1529946..1530695 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AOD73_RS07270 (AOD73_07285)	-	1530728..1531363 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AOD73_RS07275 (AOD73_07290)	-	1531409..1532302 (+)	894	WP_031639387.1	peptidoglycan DD-metalloendopeptidase family protein	-
AOD73_RS07280 (AOD73_07295)	rpoS	1532407..1533411 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AOD73_RS07285 (AOD73_07300)	fdxA	1533838..1534161 (-)	324	WP_003092272.1	ferredoxin FdxA	-
AOD73_RS07290 (AOD73_07305)	mutS	1534228..1536795 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AOD73_RS07295 (AOD73_07310)	-	1536921..1537928 (-)	1008	WP_023517892.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=135550 AOD73_RS07280 WP_003113871.1 1532407..1533411(+) (rpoS) [Pseudomonas aeruginosa strain PA1RG]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=135550 AOD73_RS07280 WP_003113871.1 1532407..1533411(+) (rpoS) [Pseudomonas aeruginosa strain PA1RG]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653