Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RN86_RS10725 Genome accession   NZ_CP012648
Coordinates   2205884..2207542 (-) Length   552 a.a.
NCBI ID   WP_053794831.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2200884..2212542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS10695 (RN86_10700) - 2201851..2202066 (-) 216 WP_053794828.1 YozE family protein -
  RN86_RS10700 (RN86_10705) - 2202177..2202869 (-) 693 WP_008809077.1 phosphoglycerate mutase -
  RN86_RS10705 (RN86_10710) perR 2203031..2203501 (-) 471 WP_008809078.1 peroxide-responsive transcriptional repressor PerR -
  RN86_RS10710 (RN86_10715) - 2203801..2204076 (-) 276 WP_008809079.1 HU family DNA-binding protein -
  RN86_RS10715 (RN86_10720) - 2204221..2205054 (-) 834 WP_053794829.1 DegV family protein -
  RN86_RS10720 (RN86_10725) - 2205118..2205846 (-) 729 WP_053794830.1 metallophosphoesterase family protein -
  RN86_RS10725 (RN86_10730) recN 2205884..2207542 (-) 1659 WP_053794831.1 DNA repair protein RecN Machinery gene
  RN86_RS10730 (RN86_10735) - 2207550..2207981 (-) 432 WP_053794832.1 arginine repressor -
  RN86_RS10735 (RN86_10740) - 2207974..2208789 (-) 816 WP_053794833.1 TlyA family RNA methyltransferase -
  RN86_RS10740 (RN86_10745) - 2208782..2209660 (-) 879 WP_053794834.1 polyprenyl synthetase family protein -
  RN86_RS10745 (RN86_10750) - 2209657..2209869 (-) 213 WP_008809086.1 exodeoxyribonuclease VII small subunit -
  RN86_RS10750 (RN86_10755) xseA 2209847..2211187 (-) 1341 WP_053794835.1 exodeoxyribonuclease VII large subunit -
  RN86_RS10755 (RN86_10760) - 2211343..2212185 (-) 843 WP_053794836.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62388.40 Da        Isoelectric Point: 4.5770

>NTDB_id=135524 RN86_RS10725 WP_053794831.1 2205884..2207542(-) (recN) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MLLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGATKAEIEGLFSLENSSAIEAIF
EEQGLELTDELIIRREILQNGRSVSRVNGQLVNLSVLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAF
YQETFDHYRQLRKQVLTLHKNQEEHKARIEMLEFQMAEIDSTSLKTGEDKALHQERDRLLNHKLIADTLTNAYAMLDNED
FSSLANVRSAMNDMESIEEYDPTYKELSSSLSETYYVLEDVTKRLEDILDGLDFDGNRLMQVESRLDLINSITRKYGGQV
DDVLEYFSQISKEYQLLTSSHSSSEDLEAELKDLEKRLVNLAGQLSQARHELAKQLESEIKQELQDLYMEKANFQVQFNK
SKFNREGNEQVEFYISTNPGENFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADNQFFIEKISDENSTVSTVRLLDFDERVEEIAKMLAGENVTEAALSQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=135524 RN86_RS10725 WP_053794831.1 2205884..2207542(-) (recN) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTTATTAGAAATTTCTATAAAAAACTTTGCTATTATTGAAGAAATCTCTCTTCATTTTGACCAAGGAATGACAGTCCT
GACCGGCGAAACTGGGGCAGGAAAGTCTATCATTATCGATGCTATGAATATGATGCTGGGTAGCCGTGCTACTACAGATG
TTATTCGTCATGGAGCTACTAAGGCAGAAATTGAAGGATTGTTTTCATTGGAAAATAGCTCAGCTATAGAAGCAATTTTT
GAAGAGCAGGGCTTGGAATTGACTGATGAGCTTATTATCCGCCGAGAAATTCTGCAAAATGGTCGCAGTGTCAGCCGGGT
TAATGGACAGTTAGTTAACCTATCAGTTTTGAAGGCTATTGGTCAACATTTAGTAGATATTCATGGTCAACATGATCAGG
AAGAATTAATGCGCCCTCAGCTTCATATAGCCATGCTGGACGAGTTTGGAGATGAGGATTTCGTGGCCTTGAAAGCCTTC
TATCAAGAAACCTTTGATCACTATCGACAGCTTCGTAAACAGGTTCTGACCTTGCATAAAAATCAAGAGGAGCATAAGGC
TCGCATTGAAATGCTAGAATTTCAGATGGCTGAAATTGATAGTACTTCCTTGAAAACTGGTGAAGACAAAGCTCTCCACC
AAGAACGTGATCGCTTACTCAATCACAAGCTGATTGCTGATACCTTGACCAATGCATACGCTATGTTGGATAACGAGGAT
TTTTCTAGTTTGGCTAATGTGCGTTCAGCTATGAACGATATGGAGTCTATTGAAGAATATGACCCAACATACAAGGAATT
ATCTTCTAGTCTTTCTGAGACCTATTACGTTCTGGAAGATGTGACTAAACGGTTGGAGGATATCTTAGATGGCCTAGATT
TTGATGGCAACCGCTTGATGCAGGTTGAAAGTCGTTTAGATTTGATTAACAGCATCACTCGAAAATATGGTGGCCAAGTA
GATGATGTTCTAGAATATTTTTCGCAAATTTCGAAAGAGTACCAGCTACTGACAAGTAGTCATTCATCTTCTGAAGATTT
AGAGGCTGAACTTAAAGATTTAGAAAAGCGTTTGGTGAATTTAGCTGGACAGCTTAGCCAAGCAAGACATGAGTTGGCTA
AACAACTTGAGTCGGAAATTAAGCAGGAACTGCAAGATCTCTATATGGAAAAAGCGAATTTTCAAGTTCAATTTAACAAG
AGCAAGTTTAACCGTGAAGGAAATGAGCAAGTTGAGTTTTATATTTCAACTAATCCTGGAGAAAACTTTAAGCCTTTAGT
TAAGGTTGCATCAGGTGGGGAATTATCTCGTCTAATGCTTGCAATTAAATCAGCTTTCTCTCGGAAAGAAGGAAAGACTA
GTATAGTCTTTGACGAAGTTGATACAGGAGTTTCGGGTCGTGTAGCCCAAGCTATCGCACAAAAAATCCATAAGATTGGC
AGTAATGGTCAGGTTTTAGCAATCTCTCATCTGCCACAAGTCATTGCCATTGCAGACAACCAATTCTTTATTGAAAAAAT
TTCTGATGAAAATTCTACTGTTTCAACTGTTCGTCTCTTGGACTTCGATGAGCGAGTGGAAGAAATTGCTAAGATGTTAG
CTGGTGAAAATGTAACAGAAGCCGCTTTGAGCCAGGCGCGTGAATTATTAAAGAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.439

100

0.469