Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | RN86_RS07585 | Genome accession | NZ_CP012648 |
| Coordinates | 1557394..1558506 (+) | Length | 370 a.a. |
| NCBI ID | WP_008809216.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain KCOM 1506 (= ChDC B679) | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1552394..1563506
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RN86_RS07560 (RN86_07555) | - | 1553197..1553928 (+) | 732 | WP_046165484.1 | polyphosphate polymerase domain-containing protein | - |
| RN86_RS07565 (RN86_07560) | - | 1553939..1554622 (+) | 684 | WP_046165485.1 | DUF4956 domain-containing protein | - |
| RN86_RS07570 (RN86_07565) | rpsU | 1554749..1554925 (+) | 177 | WP_000048054.1 | 30S ribosomal protein S21 | - |
| RN86_RS07575 (RN86_07570) | mscL | 1555023..1555403 (-) | 381 | WP_045503293.1 | large conductance mechanosensitive channel protein MscL | - |
| RN86_RS07580 (RN86_07575) | dnaG | 1555610..1557391 (+) | 1782 | WP_301280386.1 | DNA primase | - |
| RN86_RS07585 (RN86_07580) | rpoS | 1557394..1558506 (+) | 1113 | WP_008809216.1 | RNA polymerase sigma factor RpoD | Regulator |
| RN86_RS07590 (RN86_07585) | - | 1558559..1558897 (+) | 339 | WP_012000664.1 | metal-sulfur cluster assembly factor | - |
| RN86_RS07600 (RN86_07595) | - | 1559672..1560052 (+) | 381 | WP_046165487.1 | CidA/LrgA family protein | - |
| RN86_RS07605 (RN86_07600) | - | 1560045..1560743 (+) | 699 | WP_008809213.1 | LrgB family protein | - |
| RN86_RS07610 (RN86_07605) | - | 1561176..1561745 (+) | 570 | WP_046165488.1 | TlpA disulfide reductase family protein | - |
| RN86_RS07615 (RN86_07610) | mnmE | 1561886..1563259 (-) | 1374 | WP_053794574.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42405.08 Da Isoelectric Point: 4.5140
>NTDB_id=135501 RN86_RS07585 WP_008809216.1 1557394..1558506(+) (rpoS) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
Nucleotide
Download Length: 1113 bp
>NTDB_id=135501 RN86_RS07585 WP_008809216.1 1557394..1558506(+) (rpoS) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGAGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACTCGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TTGAAACGATTAACAAGCTAGTTCGTGAGCAACGTAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCGCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGAGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACTCGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TTGAAACGATTAACAAGCTAGTTCGTGAGCAACGTAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCGCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.918 |
78.919 |
0.37 |