Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RN86_RS04805 Genome accession   NZ_CP012648
Coordinates   973683..974600 (+) Length   305 a.a.
NCBI ID   WP_053794370.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 968683..979600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS04785 (RN86_04780) scaA 968979..969911 (-) 933 WP_046164653.1 metal ABC transporter substrate-binding lipoprotein/adhesin ScaA -
  RN86_RS04790 (RN86_04785) - 969938..970774 (-) 837 WP_046164652.1 metal ABC transporter permease -
  RN86_RS04795 (RN86_04790) - 970776..971495 (-) 720 WP_053794368.1 metal ABC transporter ATP-binding protein -
  RN86_RS04800 (RN86_04795) - 971642..973534 (+) 1893 WP_053794369.1 M13-type metalloendopeptidase -
  RN86_RS04805 (RN86_04800) comR 973683..974600 (+) 918 WP_053794370.1 XRE family transcriptional regulator Regulator
  RN86_RS04810 (RN86_04805) - 974746..975675 (+) 930 WP_053794898.1 ABC transporter ATP-binding protein -
  RN86_RS04815 (RN86_04810) - 975668..976546 (+) 879 WP_053794371.1 ABC transporter permease -
  RN86_RS04820 (RN86_04815) - 976777..977673 (+) 897 WP_053794372.1 PEP phosphonomutase -
  RN86_RS04825 (RN86_04820) - 977737..978930 (-) 1194 WP_053794373.1 ROK family transcriptional regulator -
  RN86_RS04830 (RN86_04825) - 979144..979461 (+) 318 WP_004188921.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36281.53 Da        Isoelectric Point: 4.4633

>NTDB_id=135470 RN86_RS04805 WP_053794370.1 973683..974600(+) (comR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MEFKEELGQKIQSLREEKGLSRQAICGEEDILTTRQLQRIEKGQSLPTIATALYIAEQLEVSLDRLANRERFELPSGYLE
LKYRLEKLYHYGDGERLQQREEMIEEIYRKYFDQLPEEEQLYLQIKQAKNDMVLTENIAYDQGLIDEYLDQALAKEKLTE
MDLEIIDLRLLALGLKDFDKKEFTCLLNKLLEAVADYPTSGLEKIQTRIIFAAGVLSHYQEYDLLPKILRVLEELMTRRN
DYQDRVFSYALQWKIALFLENNLEKAEDNYQKVKLMLELLPEDVLKENMRLDWEQDIRRYSKIDE

Nucleotide


Download         Length: 918 bp        

>NTDB_id=135470 RN86_RS04805 WP_053794370.1 973683..974600(+) (comR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
GTGGAATTCAAGGAAGAGCTAGGACAGAAAATTCAATCTCTAAGAGAAGAAAAAGGCTTGAGTCGTCAGGCAATTTGTGG
GGAAGAAGACATTTTGACAACACGGCAATTACAGCGAATTGAAAAAGGCCAGTCTCTGCCTACCATCGCGACAGCTCTCT
ATATTGCTGAGCAACTGGAAGTATCACTGGATAGGCTAGCAAATAGAGAGCGATTCGAATTGCCATCAGGCTATCTTGAA
TTGAAGTATCGCTTGGAAAAGCTTTATCACTATGGCGATGGAGAGCGCCTTCAACAAAGAGAAGAGATGATCGAGGAAAT
CTATCGGAAGTATTTCGATCAGCTCCCTGAGGAAGAACAACTTTATCTTCAGATTAAGCAGGCCAAGAACGATATGGTTT
TAACGGAAAATATTGCCTATGATCAAGGCTTAATAGATGAATATCTGGATCAGGCTTTGGCCAAAGAAAAATTGACGGAA
ATGGATCTAGAAATCATTGATTTACGCCTGTTGGCGCTTGGTTTGAAAGATTTTGACAAGAAGGAGTTTACTTGTTTGCT
AAACAAGTTGCTTGAGGCGGTAGCTGATTATCCTACCAGCGGCTTGGAAAAAATCCAGACCAGAATCATTTTTGCGGCGG
GGGTCTTGTCTCATTATCAAGAATATGACCTCCTACCTAAAATATTACGAGTCCTGGAAGAGCTGATGACTAGGAGAAAT
GATTATCAAGATCGAGTCTTTAGCTATGCGCTTCAGTGGAAAATCGCCCTCTTCTTGGAAAATAATCTCGAAAAAGCTGA
GGACAACTATCAAAAGGTCAAGCTAATGCTAGAGCTATTGCCAGAAGATGTCCTTAAGGAGAATATGAGACTGGACTGGG
AGCAGGATATAAGACGCTATAGTAAAATTGATGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(11-66)

ComR tetratricopeptide (ComR_TPR)

(75-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.374

97.377

0.364