Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RN86_RS02875 Genome accession   NZ_CP012648
Coordinates   614082..614864 (-) Length   260 a.a.
NCBI ID   WP_046164789.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609082..619864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS02860 (RN86_02855) purC 611988..612695 (-) 708 WP_011999586.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RN86_RS02865 (RN86_02860) - 612848..613087 (-) 240 WP_008808067.1 acyl carrier protein -
  RN86_RS02870 (RN86_02865) plsX 613084..614085 (-) 1002 WP_045772604.1 phosphate acyltransferase PlsX -
  RN86_RS02875 (RN86_02870) recO 614082..614864 (-) 783 WP_046164789.1 DNA repair protein RecO Machinery gene
  RN86_RS02880 (RN86_02875) - 614842..616029 (-) 1188 WP_053794267.1 pyridoxal phosphate-dependent aminotransferase -
  RN86_RS02885 (RN86_02880) - 616157..616444 (-) 288 WP_046164787.1 Veg family protein -
  RN86_RS02890 (RN86_02885) dnaB 616446..617801 (-) 1356 WP_008808062.1 replicative DNA helicase -
  RN86_RS02895 (RN86_02890) rplI 617828..618280 (-) 453 WP_011999581.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29991.29 Da        Isoelectric Point: 5.1510

>NTDB_id=135433 RN86_RS02875 WP_046164789.1 614082..614864(-) (recO) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEDGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFNGVLCPDHYHEDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=135433 RN86_RS02875 WP_046164789.1 614082..614864(-) (recO) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGATGCAGTCCATCACGAGTAAGGCGCTGGTCCTCTATAATCGAAACTTTCGTGAAGACGACAAATTAGTAAAAATCTT
TACAGAACAGGCTGGCAAGCGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATCTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAGGATTATCAGGATGTCCAGCCTTTTACT
CGAATTAATAGCGATTTGTTCATCATGGCCTATGCGACCTATGTAGCCGCTTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGATGCTGCTCTTTTTGCTTTTCTGACAAAAACCTTGGAGCTAATGGAAGACGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCATGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAATGGTGTCCTCTGTCCAGACCACTATCATGAAGACGATCGTCGCTGTCATCT
TCATCCTAATATCCCATTTTTACTTGATCAATTTCAGGCAGTGGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAGCAACAACTGCGCGAATTTATAGATCAAATTTACGACGATTATGTTGGAATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTGGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(2-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

98.077

0.731