Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RN80_RS06830 Genome accession   NZ_CP012646
Coordinates   1398960..1400627 (-) Length   555 a.a.
NCBI ID   WP_060628415.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393960..1405627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS06810 (RN80_06825) - 1395246..1395551 (-) 306 WP_000590547.1 PTS sugar transporter subunit IIB -
  RN80_RS06815 (RN80_06830) - 1395590..1396066 (-) 477 WP_000521973.1 PTS sugar transporter subunit IIA -
  RN80_RS06820 (RN80_06835) lepA 1396328..1398151 (-) 1824 WP_001047207.1 translation elongation factor 4 -
  RN80_RS06825 (RN80_06840) - 1398230..1398958 (-) 729 WP_060628413.1 metallophosphoesterase family protein -
  RN80_RS06830 (RN80_06845) recN 1398960..1400627 (-) 1668 WP_060628415.1 DNA repair protein RecN Machinery gene
  RN80_RS06835 (RN80_06850) - 1400634..1401065 (-) 432 WP_001034401.1 arginine repressor -
  RN80_RS06840 (RN80_06855) - 1401058..1401873 (-) 816 WP_060628417.1 TlyA family RNA methyltransferase -
  RN80_RS06845 (RN80_06860) - 1401866..1402741 (-) 876 WP_060628418.1 polyprenyl synthetase family protein -
  RN80_RS06850 (RN80_06865) - 1402738..1402950 (-) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  RN80_RS06855 (RN80_06870) xseA 1402928..1404268 (-) 1341 WP_060628419.1 exodeoxyribonuclease VII large subunit -
  RN80_RS06860 (RN80_06875) udk 1404395..1405033 (-) 639 WP_001181377.1 uridine kinase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62798.25 Da        Isoelectric Point: 4.6845

>NTDB_id=135394 RN80_RS06830 WP_060628415.1 1398960..1400627(-) (recN) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLKVNLVDLAGQLASARHDLAQKLESEIKQELQDLYMEKARFQVRFSK
GKFSREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=135394 RN80_RS06830 WP_060628415.1 1398960..1400627(-) (recN) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGGGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTGGAATTGGGGGATGAGATTATCATCCGTCGAGAAATCTTGCAAAATGGTCGGAGTATTAGTCGTGT
TAATGGCCAGATGGTCAATCTGTCTGTTTTGCGTGCTATTGGACAACATCTGGTAGATATACATGGCCAGCATGATCAAG
AGGAGTTAATGCGTCCTCAACTTCATATCCAGATGTTGGATGAATTTGGCGATGCAGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCTTATCGAAAAATGCGTAAGCAGGTTCTGGAAGTTAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGATTTGGCTCTCAATC
AAGAGCGTGATAAACTGCTCAACCATAAAAATATTGCGGATACACTGACCAATGCCTACAGCATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCGGCCATGAATGACATGGAGAGTGTCGAAGAGTACGACCCTGAATATCGTGAAAT
TTCAAGCTCACTGTCTGAGACCTACTATGTCTTAGAAGACATTAGCAAACGTTTGGAAGCTATTATAGAGGACCTTGATT
TTGACGGCAATCGTCTTATGCAGGTTGAGAATCGTTTGGACCTCCTTCACACTATTACACGTAAGTATGGTGGGACTGTA
GACGATGTCTTGCTTTATTTTGCTAAAATTACGGAAGAATACAATCTCTTGACAGGCAATAACCTTTCGTCTGAGGACAT
GGAAGCAGAGCTCAAGAAATTGAAAGTCAATCTTGTTGATTTGGCAGGTCAACTTGCATCTGCTCGTCATGACTTGGCTC
AGAAATTAGAATCTGAGATTAAACAAGAACTGCAAGACCTCTATATGGAAAAAGCTCGGTTTCAGGTTCGTTTTAGCAAG
GGAAAATTCAGTCGTGAGGGAAATGAAACGGTCGAATTTTACATTTCAACCAACCCTGGCGAAGATTTTAAACCCTTGGT
CAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGCTAGCTATTAAATCTGCCTTTTCTCGCAAAGAGGGCAAGACAA
GTATTGTCTTTGATGAAGTGGATACAGGAGTTTCAGGCCGTGTAGCTCAGGCTATTGCACAGAAGATTCACAAGATTGGC
CAACATGGTCAGGTTCTGGCTATTTCCCATTTACCACAAGTGATTGCGATTGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCAATGACCATTCAACAGTTTCGACTGTTCGTCTCTTGACGGTTGAAGAGCGAGTGGAAGAAGTTGCTAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.134

100

0.441