Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RN80_RS04210 Genome accession   NZ_CP012646
Coordinates   830457..832679 (+) Length   740 a.a.
NCBI ID   WP_060628754.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 825457..837679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS04185 (RN80_04195) - 825919..827109 (-) 1191 WP_060627716.1 ferric reductase-like transmembrane domain-containing protein -
  RN80_RS04190 (RN80_04200) - 827358..828017 (-) 660 WP_060627717.1 amino acid ABC transporter permease -
  RN80_RS04195 (RN80_04205) - 828027..828704 (-) 678 WP_000131145.1 amino acid ABC transporter permease -
  RN80_RS04200 (RN80_04210) - 828717..829511 (-) 795 WP_080998496.1 transporter substrate-binding domain-containing protein -
  RN80_RS04205 (RN80_04215) - 829522..830280 (-) 759 WP_001229569.1 amino acid ABC transporter ATP-binding protein -
  RN80_RS04210 (RN80_04220) recJ 830457..832679 (+) 2223 WP_060628754.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RN80_RS04215 (RN80_04225) - 832853..834514 (+) 1662 WP_060627718.1 ribonuclease J -
  RN80_RS04220 (RN80_04230) - 834583..835362 (+) 780 WP_000290006.1 alpha/beta hydrolase -
  RN80_RS04225 (RN80_04235) - 835496..836719 (+) 1224 WP_060627720.1 aminoacyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82483.98 Da        Isoelectric Point: 4.3380

>NTDB_id=135368 RN80_RS04210 WP_060628754.1 830457..832679(+) (recJ) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHDPYLLHDMDKAVGRIRQAIEE
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSIPETLPDAYAIVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEITLMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAAGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
IFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGKRATEFSQTKQLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGELPNLADSEAVIVKTVPEDITQLKTIFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQIFEELGFVVIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=135368 RN80_RS04210 WP_060628754.1 830457..832679(+) (recJ) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAAGTAGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ATTGGGTCCTGAGGTGGCTCGGTTACTATTTGAGAGAGGGATTCAGGACCAAGAGAGTCTGAAGAAGTTTTTAGAACCTT
CCTTGGAGGACTTGCATGACCCTTATCTACTCCATGATATGGATAAGGCAGTGGGACGGATTCGTCAGGCTATTGAAGAA
GGGGAAAATATCCTCATTTATGGAGATTACGATGCGGATGGCATGACTTCAGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGCGCTGAGTGCCGGGTTTATCTGCCCAATCGTTTTACTGATGGCTATGGTCCAAATGCTAGTGTTTATAAATACT
TTATCGAGCAAGAAGGGATTTCCTTGATTGTGACGGTGGACAATGGAGTTGCGGGTCACGAAGCCATTGAACTGGCTCAG
TCTATGGGAGTAGATGTCATTGTGACAGACCACCATTCCATACCTGAAACCTTACCAGATGCCTATGCTATTGTCCATCC
TGAACATCCGGATGCGAACTATCCTTTCAAATATTTGGCTGGTTGCGGAGTGGCTTTCAAGCTGGCTTGTGCCCTGTTAG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTCGCTATTGGTACCATTGCTGATATGGTTAGTTTGACAGATGAGAATCGT
ATTTTGGTTCAATATGGTCTAGAAATGCTGGGGCATACTCAGCGCATTGGTTTACAAGAAATGCTGGATATGGCTGGGAT
TGCCGCTAATGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCTCCTCGTTTGAATGCCTTGGGCCGTTTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGGTTTGATGATGAAGAAGCGCATGAGATTACTCTCATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTTCAGTCTATCTATGAAGAAGCTAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTTTT
GGCTAAGGAGGGCTGGAATCCTGGGGTTCTAGGAATCGTGGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTCAATATAGAGGACGGTCGTGCCAAGGGTAGTGCTCGTAGCGTGGAAGCGGTCGATATTTTTGAGGCTCTGGATCCT
CATAGAGACCTCTTCATAGCCTTTGGTGGTCATGCTGGTGCGGCAGGAATGACGCTGGAAGTTGAGAAACTCTCAGATTT
ATCTCAGGTTTTGGAAGATTATGTCCGTGAAAAAGGAGCAGATGCTGCTGGCAAGAACAAGTTAAATCTAGATGAAGAGC
TAGATTTGGAGACACTTAGCTTGGAAACGGTCAAAAGTTTTGAACGTTTGGCACCTTTTGGCATGGACAATCAGAAACCT
ATCTTTTATATCAAGGATTTTCAGGTCGAAAGTGCCCGTACTATGGGGGCAGGTAATGCCCATCTCAAGCTGAAAATTTC
TAAAGGCGAGGCGAGTTTTGAGGTAGTGGCCTTTGGCCAAGGGAAAAGGGCGACTGAATTCTCACAGACCAAGCAATTGG
AATTGGCAGTGACTCTCTCTGTCAACCAATGGAATGGCCAAACTGCCCTGCAGCTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTTTTTAATATCCGTGGGAAGAATGCAGTCTTGCCAGAAGGAGTTCCAGTCTTGGATTTTGCTGGAGAACT
GCCAAATCTGGCGGATAGTGAAGCTGTTATCGTAAAAACCGTTCCTGAGGATATTACTCAGCTGAAGACCATTTTTCAGG
AACAGAATTTCTCTGCGGTCTATTTCAAAAATGATATTGACAAGGCCTACTATCTAACAGGTTATGGGACTAGAGAGCAG
TTTGCCAAATTGTACAAGACCATCTACCAGTTTCCAGAGTTTGATATTCGCTACAAGCTGAAAGACTTGGCTGCTTATCT
CAATATTCAACAAATCTTGCTGGTCAAAATGATTCAAATATTTGAAGAATTAGGTTTTGTGGTAATCAAAGATGGGGTTA
TGACAGTCAATAAAGAAGCGCCAAAGAGAGAGATAGGAGAAAGTCAGATTTACCAAAATCTCAAACAAACCGTCAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATTTATGACTTTTTAATGGAAAAAGAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-735)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

96.622

100

0.966
  recJ Bacillus subtilis subsp. subtilis str. 168

36.528

100

0.381

Multiple sequence alignment