Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RN80_RS03655 Genome accession   NZ_CP012646
Coordinates   716113..716709 (-) Length   198 a.a.
NCBI ID   WP_000248751.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711113..721709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS03645 (RN80_03655) amiA3 711830..713812 (+) 1983 WP_060627565.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS03650 (RN80_03660) pbp1a 713954..716116 (-) 2163 WP_060627567.1 penicillin-binding protein PBP1A -
  RN80_RS03655 (RN80_03665) recU 716113..716709 (-) 597 WP_000248751.1 Holliday junction resolvase RecU Machinery gene
  RN80_RS03660 (RN80_03670) - 716776..717303 (+) 528 WP_060627569.1 SLOG family protein -
  RN80_RS03665 (RN80_03675) gpsB 717373..717702 (+) 330 WP_060627571.1 cell division regulator GpsB -
  RN80_RS03675 (RN80_03685) - 718188..719345 (+) 1158 WP_060627573.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  RN80_RS03680 (RN80_03690) mapZ 719359..720783 (+) 1425 WP_060627575.1 cell division site-positioning protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23084.52 Da        Isoelectric Point: 9.8840

>NTDB_id=135360 RN80_RS03655 WP_000248751.1 716113..716709(-) (recU) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MVNYPHKISSKKSQTSISQPKNFANRGMTFEKMINATNDYYLTHGMAVIHKKPTPVQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYRGHYIDFEAKETRQKNAIPMKNFHLHQIQHMEQVLEQQGICFVLLHFSSQQETYLLPAPDLIRFYHQDKGQK
SMPLGYIQEYGYLVKQGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=135360 RN80_RS03655 WP_000248751.1 716113..716709(-) (recU) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGTCAACTATCCTCATAAAATTTCATCAAAAAAAAGCCAAACATCCATTTCTCAACCAAAAAATTTCGCAAATCGAGG
AATGACTTTTGAAAAGATGATTAACGCTACAAACGACTACTATCTGACGCATGGCATGGCAGTTATCCATAAAAAGCCAA
CGCCTGTTCAGATTGTTCGAGTAGACTATCCTCAACGTAGTCGAGCCAAAATTGTAGAAGCCTACTTTAGACAAGCTTCC
ACAACAGATTACTCTGGCGTATATAGAGGACATTACATTGACTTTGAAGCTAAGGAGACACGACAAAAGAATGCTATCCC
AATGAAGAACTTCCATCTTCACCAGATTCAACATATGGAACAAGTTCTAGAACAGCAGGGCATTTGCTTCGTACTACTTC
ATTTTTCCTCTCAACAAGAAACTTATTTGTTGCCGGCACCTGATTTGATTCGCTTTTATCATCAAGATAAGGGGCAAAAA
TCAATGCCACTTGGATATATTCAAGAATACGGATATTTAGTAAAGCAAGGAGCTTTCCCTCAAATTCCCTATCTCGATAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49

100

0.495