Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG73_RS15990 Genome accession   NZ_CP010242
Coordinates   3056792..3057421 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051792..3062421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG73_RS15965 (RG73_15040) ycbZ 3052194..3053954 (-) 1761 WP_000156526.1 Lon protease family protein -
  RG73_RS15970 (RG73_15045) matP 3054140..3054592 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  RG73_RS15975 (RG73_15050) ompA 3054667..3055707 (-) 1041 WP_074014769.1 porin OmpA -
  RG73_RS15985 (RG73_15060) sulA 3056064..3056573 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG73_RS15990 (RG73_15065) sxy/tfoX 3056792..3057421 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG73_RS15995 (RG73_15070) yccS 3057384..3059546 (-) 2163 WP_000875044.1 YccS family putative transporter -
  RG73_RS16000 (RG73_15075) yccF 3059556..3060002 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RG73_RS16005 (RG73_15080) helD 3060125..3062179 (+) 2055 WP_074014660.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=135333 RG73_RS15990 WP_000839153.1 3056792..3057421(+) (sxy/tfoX) [Escherichia coli strain S56]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=135333 RG73_RS15990 WP_000839153.1 3056792..3057421(+) (sxy/tfoX) [Escherichia coli strain S56]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment