Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG73_RS08365 Genome accession   NZ_CP010242
Coordinates   1590795..1591331 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1585795..1596331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG73_RS08345 (RG73_07855) aphA 1586084..1586797 (+) 714 WP_001307512.1 acid phosphatase AphA -
  RG73_RS08350 (RG73_07860) yjbQ 1586908..1587324 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RG73_RS08355 (RG73_07865) yjbR 1587328..1587684 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RG73_RS08360 (RG73_07870) uvrA 1587719..1590541 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  RG73_RS08365 (RG73_07875) ssb 1590795..1591331 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RG73_RS08370 (RG73_07880) yjcB 1591430..1591711 (-) 282 WP_001295689.1 YjcB family protein -
  RG73_RS08380 (RG73_07885) pdeC 1592141..1593727 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  RG73_RS08385 (RG73_07890) soxS 1593730..1594053 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RG73_RS08390 (RG73_07895) soxR 1594139..1594603 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=135330 RG73_RS08365 WP_000168305.1 1590795..1591331(+) (ssb) [Escherichia coli strain S56]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=135330 RG73_RS08365 WP_000168305.1 1590795..1591331(+) (ssb) [Escherichia coli strain S56]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment