Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RN80_RS01795 Genome accession   NZ_CP012646
Coordinates   337283..338053 (-) Length   256 a.a.
NCBI ID   WP_000616135.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332283..343053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01775 (RN80_01785) - 333456..334331 (+) 876 WP_060627299.1 helix-turn-helix domain-containing protein -
  RN80_RS01780 (RN80_01790) - 334413..335603 (-) 1191 WP_060627300.1 N-acetylmuramoyl-L-alanine amidase family protein -
  RN80_RS01785 (RN80_01795) - 336055..336288 (-) 234 WP_000136446.1 acyl carrier protein -
  RN80_RS01790 (RN80_01800) plsX 336294..337286 (-) 993 WP_060627301.1 phosphate acyltransferase PlsX -
  RN80_RS01795 (RN80_01805) recO 337283..338053 (-) 771 WP_000616135.1 DNA repair protein RecO Machinery gene
  RN80_RS01800 (RN80_01810) - 338050..339219 (-) 1170 WP_060627302.1 pyridoxal phosphate-dependent aminotransferase -
  RN80_RS01805 (RN80_01815) - 339368..340378 (+) 1011 WP_060627303.1 YeiH family protein -
  RN80_RS01815 (RN80_01825) - 340607..341044 (-) 438 WP_060627304.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29832.30 Da        Isoelectric Point: 5.1721

>NTDB_id=135329 RN80_RS01795 WP_000616135.1 337283..338053(-) (recO) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=135329 RN80_RS01795 WP_000616135.1 337283..338053(-) (recO) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGGGAGGATGATAAGCTAGTCAAGATTTT
TACAGAGCAGGCTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCTCCAGTTATTCAGCCCTTGG
TGCTGGCTCGGTTTCTCTTACGAATCAATGATGACGGGCTTAGCTACATTGAGGACTATCATGAGGTGATGACTTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCTTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAATTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCAGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCTTTTGATTTTTCTTTCAAATATGGAGCCTGCCTCTGCCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAGTTTCAAGCCATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGTTACGCCAATTTATGGATCAACTCTACGAAGAATACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988