Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RN80_RS01295 Genome accession   NZ_CP012646
Coordinates   224042..225748 (-) Length   568 a.a.
NCBI ID   WP_060627233.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 219042..230748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01275 (RN80_01285) - 219815..221164 (-) 1350 WP_000018268.1 glucose-6-phosphate isomerase -
  RN80_RS01285 (RN80_01295) - 221335..222024 (-) 690 WP_060627231.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RN80_RS01290 (RN80_01300) patB 222274..224040 (-) 1767 WP_060627232.1 multidrug efflux ABC transporter subunit PatB -
  RN80_RS01295 (RN80_01305) rcrP 224042..225748 (-) 1707 WP_060627233.1 multidrug efflux ABC transporter subunit PatA Regulator
  RN80_RS01300 (RN80_01310) hexA 225894..228428 (-) 2535 WP_060627234.1 DNA mismatch repair protein MutS Machinery gene
  RN80_RS01305 (RN80_01315) argR 228479..228925 (-) 447 WP_001231476.1 arginine repressor -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62653.15 Da        Isoelectric Point: 6.7625

>NTDB_id=135324 RN80_RS01295 WP_060627233.1 224042..225748(-) (rcrP) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLDALLAGKYEAIYSIGAWLIGVAVVGLVAGGLNVVLASYIAQG
VSSDLREDAFRKIQTFSYANIEQFNAGNLVVRMTNDINQIQNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMV
VLIFGLTAVMMGMMGPRFAKFQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTEVSDELLGQNLYIGYAFSVVEPFM
MLVGYGAVFLSIWLVAGMVQSNPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISMRRIREILDAEPAMTFKDVPD
EELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGAIKIGGKDIREVSEGTL
RKTVSIVLQRAILFSGTIADNLRQGKGDATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLDQGRLIGQGTHADLVANNAVYREIY
ETQKGKEE

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=135324 RN80_RS01295 WP_060627233.1 224042..225748(-) (rcrP) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGCTGATTCAGAAAATAAAAACCTACAAGTGGCAGGCCTTGGCTTCGCTCCTGATGACAGGCTTGATGGTTGCTAGTTC
ACTTCTGCAACCGCGTTATCTGCAGGAAGTGTTAGACGCTCTCCTTGCTGGGAAATATGAAGCTATCTATAGTATAGGGG
CTTGGTTGATTGGTGTGGCCGTGGTCGGTCTGGTTGCTGGTGGGCTCAATGTTGTCCTTGCATCCTATATTGCCCAAGGA
GTTTCATCTGACCTTCGAGAGGATGCCTTCCGTAAAATCCAAACTTTTTCTTATGCTAATATTGAACAATTTAATGCGGG
AAATCTAGTCGTTCGCATGACAAATGATATCAACCAGATTCAGAACGTCGTCATGATGACCTTCCAAATTCTTTTCAGAC
TTCCCCTCTTGTTCATCGGTTCGTTTATCTTGGCGGTTCAAACCCTACCTTCTCTGTGGTGGGTGATTGTTCTCATGGTA
GTCTTGATTTTTGGTTTGACTGCTGTCATGATGGGTATGATGGGGCCTCGTTTTGCCAAGTTTCAAACCCTGCTTGAACG
CATCAATGCCATTGCCAAGGAAAATCTGCGTGGCGTTCGCGTGGTCAAGTCCTTTGTCCAAGAAAAAGAGCAGTTTGCTA
AGTTTACGGAGGTTTCAGACGAGCTTCTCGGTCAAAATCTTTACATCGGTTATGCCTTTTCAGTAGTGGAACCTTTCATG
ATGTTGGTCGGTTATGGGGCGGTATTCCTCTCTATTTGGCTAGTTGCAGGGATGGTTCAGTCGAATCCGTCAGTTGTTGG
CTCCATTGCTTCCTTTGTCAATTACCTAAGCCAGATTATCTTTACCATTGTCATGGTTGGATTTTTGGGAAATTCTGTCA
GTCGTGCTATGATTTCTATGCGTCGTATTCGAGAAATTCTTGACGCAGAGCCAGCTATGACCTTCAAGGATGTGCCAGAT
GAAGAGTTGGTCGGAAGTCTTAGCTTTGAAAATGTAACCTTTACCTATCCAATGGACAAGGAACCAATGCTGAAAGATGT
GAGCTTTACTATCGAACCTGGTCAAATGGTTGGTGTAGTTGGAGCGACTGGCGCAGGAAAGTCAACCTTAGCTCAATTGA
TTCCACGTCTCTTTGACCCACAGGAAGGGGCTATCAAAATCGGAGGTAAGGATATTCGAGAAGTTAGTGAAGGGACCCTG
CGTAAAACAGTTTCTATCGTTCTTCAACGTGCCATTCTCTTCAGTGGAACGATTGCAGATAACTTGAGACAGGGTAAGGG
AGATGCTACTCTATTTGAAATGGAGCGAGCAGCCAATATTGCCCAGGCTAGTGAATTCATTCATCGTATGGAGAAAACCT
TTGAAAGTCCGGTTGAGGAACGGGGAACCAATTTCTCTGGTGGGCAAAAGCAAAGGATGTCGATTGCGCGTGGAATTGTC
AGCAATCCACGTATTCTGATTTTTGACGATTCGACCTCGGCCTTGGATGCCAAGTCAGAGCGCCTAGTGCAAGAAGCCTT
GAATAAGGACTTGAAGGGAACAACAACCATTATCATCGCGCAAAAGATTAGCTCGGTTGTCCATGCAGACAAGATCTTAG
TACTGGATCAAGGACGATTGATTGGTCAAGGCACGCATGCAGACTTGGTTGCCAACAATGCTGTTTACCGTGAAATCTAT
GAAACACAGAAAGGAAAGGAGGAGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-281)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

33.717

100

0.361