Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RN80_RS01010 Genome accession   NZ_CP012646
Coordinates   179129..180049 (-) Length   306 a.a.
NCBI ID   WP_060627202.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 174129..185049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00990 (RN80_01000) - 174832..175707 (+) 876 WP_080998465.1 RluA family pseudouridine synthase -
  RN80_RS00995 (RN80_01005) gap 175775..176785 (-) 1011 WP_000260687.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  RN80_RS01000 (RN80_01010) - 176962..178263 (-) 1302 WP_172672627.1 ABC transporter permease -
  RN80_RS01005 (RN80_01015) - 178232..178915 (-) 684 WP_060627201.1 ABC transporter ATP-binding protein -
  RN80_RS01010 (RN80_01020) comR 179129..180049 (-) 921 WP_060627202.1 helix-turn-helix domain-containing protein Regulator
  RN80_RS01015 (RN80_01025) adhE 180173..182824 (-) 2652 WP_060627203.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  RN80_RS01020 (RN80_01030) - 183125..183535 (-) 411 WP_020902388.1 MORN repeat-containing protein -
  RN80_RS01025 (RN80_01035) - 183522..183965 (-) 444 WP_060627204.1 low molecular weight protein-tyrosine-phosphatase -
  RN80_RS01030 (RN80_01040) yajC 184012..184311 (-) 300 WP_001069289.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 36353.67 Da        Isoelectric Point: 4.6364

>NTDB_id=135313 RN80_RS01010 WP_060627202.1 179129..180049(-) (comR) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MNKINELGDKVRLLREEKGLSRPVFCGDESELSVRQLVRIEKGEFRPTIKTLEYIADRLEIPSYVLMPDYKELPKRYQEL
KYFLLHHPDYGDKELQEQKEEYFDEIFECFYDDLPRDEKMIVDCLQAIDAVRATSNSLYGSGVIEDSLQDLLSRDVYKAE
ELLKLRLYFLCQLMDGLNEGEIKKSEHETILYFHDKLSSQVDKIEFDCLDLLRDSLLASLTCIEVMGLLHYFKRAVETLN
KIGQKTRDFQKQPIVSMIEWKYYIQMDYETAKQKYEEAKMMARMFGNEKLLVSLDNEWAEDLERYR

Nucleotide


Download         Length: 921 bp        

>NTDB_id=135313 RN80_RS01010 WP_060627202.1 179129..180049(-) (comR) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAACAAGATAAATGAGTTAGGGGATAAAGTGCGACTTTTAAGAGAGGAGAAAGGACTTAGTCGTCCAGTTTTTTGTGG
GGATGAGTCTGAATTATCAGTGCGTCAGTTGGTGAGAATCGAAAAAGGAGAATTTCGACCGACTATAAAAACACTAGAAT
ATATTGCAGATAGATTAGAAATTCCATCCTACGTCTTGATGCCAGATTATAAGGAACTGCCTAAACGCTACCAAGAATTA
AAGTACTTTCTTTTACATCACCCTGACTATGGAGACAAGGAGTTGCAAGAACAAAAGGAAGAATATTTTGATGAGATTTT
TGAGTGTTTTTATGATGACCTGCCCCGTGATGAGAAGATGATAGTGGACTGCCTTCAGGCAATAGATGCAGTGAGAGCGA
CTAGTAATTCTTTATACGGAAGTGGTGTGATTGAGGACAGTCTTCAAGACTTACTATCCAGAGATGTATATAAGGCTGAG
GAATTGTTGAAATTGAGACTGTATTTTCTTTGTCAGTTAATGGATGGTTTAAACGAGGGTGAGATAAAAAAGTCTGAGCA
TGAAACTATTCTTTATTTTCATGACAAATTAAGTTCTCAGGTTGATAAGATAGAGTTCGATTGTTTGGACTTACTTAGAG
ACTCCTTGTTAGCTTCTTTAACTTGTATAGAGGTTATGGGGTTGCTTCATTATTTTAAGAGGGCAGTCGAGACCTTAAAT
AAAATAGGGCAAAAAACACGAGATTTTCAAAAACAACCGATTGTCTCGATGATTGAGTGGAAATATTATATTCAGATGGA
TTATGAAACAGCCAAACAAAAGTATGAAGAAGCAAAAATGATGGCAAGGATGTTTGGCAATGAGAAGTTACTCGTTAGTT
TAGATAATGAATGGGCCGAGGATCTAGAAAGATATCGTTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(74-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.209

98.366

0.366