Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RN80_RS00385 Genome accession   NZ_CP012646
Coordinates   72690..73649 (+) Length   319 a.a.
NCBI ID   WP_060627142.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67690..78649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS10225 - 67777..67839 (-) 63 Protein_72 YSIRK-type signal peptide-containing protein -
  RN80_RS00365 (RN80_00370) - 68143..69774 (+) 1632 WP_060627140.1 Na/Pi cotransporter family protein -
  RN80_RS00370 (RN80_00375) - 69871..70167 (-) 297 WP_045605599.1 enterocin immunity protein -
  RN80_RS00375 (RN80_00380) pepA 70189..71253 (-) 1065 WP_060627141.1 glutamyl aminopeptidase -
  RN80_RS00380 (RN80_00385) galE 71548..72546 (+) 999 WP_080998460.1 UDP-glucose 4-epimerase GalE -
  RN80_RS00385 (RN80_00390) ceuB 72690..73649 (+) 960 WP_060627142.1 ABC transporter permease Machinery gene
  RN80_RS00390 (RN80_00395) - 73639..74595 (+) 957 WP_060627143.1 iron chelate uptake ABC transporter family permease subunit -
  RN80_RS00395 (RN80_00400) - 74592..75344 (+) 753 WP_060627144.1 ABC transporter ATP-binding protein -
  RN80_RS00400 (RN80_00405) - 75440..76405 (+) 966 WP_060627145.1 siderophore ABC transporter substrate-binding protein -
  RN80_RS09455 - 76514..77862 (+) 1349 WP_155455681.1 IS3 family transposase -
  RN80_RS00415 (RN80_00420) yidD 77955..78197 (-) 243 WP_000821624.1 membrane protein insertion efficiency factor YidD -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35333.28 Da        Isoelectric Point: 9.7614

>NTDB_id=135301 RN80_RS00385 WP_060627142.1 72690..73649(+) (ceuB) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFALDHETWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILIAVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSETKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRRDAV

Nucleotide


Download         Length: 960 bp        

>NTDB_id=135301 RN80_RS00385 WP_060627142.1 72690..73649(+) (ceuB) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTTTACTCCTAGTCTTTCTCTCTATTAGCATTGGAACCAGTGATTTTTC
ATGGGGAAAACTCTTTGCTCTGGATCATGAAACTTGGCTCCTCTTTCAAGAGTCCCGTCTTCCAAGGACGATTAGCATTC
TCCTGACAGCCTCTAGTATGAGTATGGCAGGCCTCCTCATGCAGACCATTACCCAAAATCAGTTTGCTGCTCCGAGTACA
GTTGGGACCACTGAAGCCGCCAAACTAGGAATGGTACTGAGCCTCTTTGTCTTTCCGTCGGCTAGTCTGACCCAAAAGAT
GCTCTTTGCTTTTGTTTCATCCATAGTATTTACCCTCTTCTTTCTGGCCTTTATGACTATTTTTACTGTAAAGGAGAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGTGGAATTATCGGTTCTGTCACAGAAGTTATCGCCTACCGTTTCAATCTG
GTTCAGAGTATGACTGCTTGGACCCAGGGTTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATTATCCTGATTGCCGTTTGGAAATTGTCCCAAACCTTTACCATCATGAATCTGGGTAAGGAAACCAGTGAGAGTTTGG
GGATTTCTTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTTGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTGAGTGAAACCAAGCTCAT
GGTCGCACTGGTCGGTGCCAATCTGGTTCTGGCCTGCGATATCCTATCCCGAGTTCTGATTCGTCCCTATGAGTTGTCTG
TCAGTCTTCTACTAGGAATCATCGGTAGCCTCGTCTTTATCCTACTTCTCTGGAGAGGAGGACGAAGAGATGCAGTTTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.582

95.925

0.361