Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG70_RS04510 Genome accession   NZ_CP010236
Coordinates   868433..869062 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S42     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 863433..874062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG70_RS04485 (RG70_04240) ycbZ 863823..865583 (-) 1761 WP_000156526.1 Lon protease family protein -
  RG70_RS04490 (RG70_04245) matP 865769..866221 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  RG70_RS04495 (RG70_04250) ompA 866296..867348 (-) 1053 WP_000750419.1 porin OmpA -
  RG70_RS04505 (RG70_04260) sulA 867705..868214 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG70_RS04510 (RG70_04265) sxy/tfoX 868433..869062 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG70_RS04515 (RG70_04270) yccS 869025..871187 (-) 2163 WP_000875019.1 YccS family putative transporter -
  RG70_RS04520 (RG70_04275) yccF 871197..871643 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RG70_RS04525 (RG70_04280) helD 871766..873820 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=135252 RG70_RS04510 WP_000839153.1 868433..869062(+) (sxy/tfoX) [Escherichia coli strain S42]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=135252 RG70_RS04510 WP_000839153.1 868433..869062(+) (sxy/tfoX) [Escherichia coli strain S42]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment