Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG69_RS16330 Genome accession   NZ_CP010235
Coordinates   3120430..3121059 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S40     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115430..3126059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG69_RS16315 (RG69_15535) helD 3115672..3117726 (-) 2055 WP_000420533.1 DNA helicase IV -
  RG69_RS16320 (RG69_15540) yccF 3117849..3118295 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG69_RS16325 (RG69_15545) yccS 3118305..3120467 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RG69_RS16330 (RG69_15550) sxy/tfoX 3120430..3121059 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG69_RS16335 (RG69_15555) sulA 3121278..3121787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG69_RS16345 (RG69_15565) ompA 3122144..3123184 (+) 1041 WP_000750416.1 porin OmpA -
  RG69_RS16350 (RG69_15570) matP 3123260..3123712 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG69_RS16355 (RG69_15575) ycbZ 3123898..3125658 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=135245 RG69_RS16330 WP_000839153.1 3120430..3121059(-) (sxy/tfoX) [Escherichia coli strain S40]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=135245 RG69_RS16330 WP_000839153.1 3120430..3121059(-) (sxy/tfoX) [Escherichia coli strain S40]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment