Detailed information NTG0135232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AN203_RS05555
• Genome accession: NZ_CP012635
• Coordinates: 1132454..1133446 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SF-088
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1127454..1138446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN203_RS05525 (AN203_05515)	ispD	1127515..1128225 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AN203_RS05530 (AN203_05520)	ispF	1128225..1128704 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AN203_RS05535 (AN203_05525)	truD	1128701..1129750 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
AN203_RS05540 (AN203_05530)	surE	1129731..1130492 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AN203_RS05545 (AN203_05535)	pcm	1130486..1131112 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AN203_RS05550 (AN203_05540)	nlpD	1131297..1132391 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AN203_RS05555 (AN203_05545)	rpoS	1132454..1133446 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AN203_RS05560 (AN203_05550)	-	1133624..1134175 (-)	552	WP_001179442.1	flavodoxin family protein	-
AN203_RS05565 (AN203_05555)	-	1134400..1135443 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AN203_RS05570 (AN203_05560)	ygbN	1135586..1136950 (-)	1365	WP_000104443.1	GntP family transporter	-
AN203_RS05575 (AN203_05565)	ygbM	1137039..1137815 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=135232 AN203_RS05555 WP_000081550.1 1132454..1133446(+) (rpoS) [Escherichia coli strain SF-088]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=135232 AN203_RS05555 WP_000081550.1 1132454..1133446(+) (rpoS) [Escherichia coli strain SF-088]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715