Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AN203_RS00370 Genome accession   NZ_CP012635
Coordinates   74212..74880 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain SF-088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69212..79880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN203_RS00340 (AN203_00340) yicC 69231..70094 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  AN203_RS00345 (AN203_00345) rph 70221..70937 (+) 717 WP_001247093.1 ribonuclease PH -
  AN203_RS00350 (AN203_00350) pyrE 71003..71644 (+) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  AN203_RS00355 (AN203_00355) slmA 71681..72277 (-) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  AN203_RS00360 (AN203_00360) dut 72384..72842 (-) 459 WP_000976066.1 dUTP diphosphatase -
  AN203_RS00365 (AN203_00365) coaBC 72820..74040 (-) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AN203_RS00370 (AN203_00370) radC 74212..74880 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AN203_RS00375 (AN203_00375) rpmB 75097..75333 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AN203_RS00380 (AN203_00380) rpmG 75354..75521 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AN203_RS00385 (AN203_00385) mutM 75619..76428 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AN203_RS00390 (AN203_00390) coaD 76467..76946 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AN203_RS00395 (AN203_00395) waaA 76954..78231 (-) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AN203_RS00400 (AN203_00400) rfaQ 78644..79702 (+) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=135210 AN203_RS00370 WP_001297375.1 74212..74880(+) (radC) [Escherichia coli strain SF-088]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=135210 AN203_RS00370 WP_001297375.1 74212..74880(+) (radC) [Escherichia coli strain SF-088]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496