Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG65_RS12635 Genome accession   NZ_CP010228
Coordinates   2384274..2384903 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain S3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379274..2389903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG65_RS12620 (RG65_12030) helD 2379516..2381570 (-) 2055 WP_000420536.1 DNA helicase IV -
  RG65_RS12625 (RG65_12035) yccF 2381693..2382139 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG65_RS12630 (RG65_12040) yccS 2382149..2384311 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RG65_RS12635 (RG65_12045) sxy/tfoX 2384274..2384903 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG65_RS12640 (RG65_12050) sulA 2385122..2385631 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG65_RS12650 (RG65_12060) ompA 2385988..2387028 (+) 1041 WP_000750416.1 porin OmpA -
  RG65_RS12655 (RG65_12065) matP 2387104..2387556 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG65_RS12660 (RG65_12070) ycbZ 2387742..2389502 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=135151 RG65_RS12635 WP_000839153.1 2384274..2384903(-) (sxy/tfoX) [Escherichia coli strain S3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=135151 RG65_RS12635 WP_000839153.1 2384274..2384903(-) (sxy/tfoX) [Escherichia coli strain S3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment