Detailed information NTG0135144

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AN204_RS05640
• Genome accession: NZ_CP012633
• Coordinates: 1143114..1144106 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SF-166
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1138114..1149106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN204_RS05610 (AN204_05610)	ispD	1138175..1138885 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AN204_RS05615 (AN204_05615)	ispF	1138885..1139364 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AN204_RS05620 (AN204_05620)	truD	1139361..1140410 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
AN204_RS05625 (AN204_05625)	surE	1140391..1141152 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AN204_RS05630 (AN204_05630)	pcm	1141146..1141772 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AN204_RS05635 (AN204_05635)	nlpD	1141957..1143051 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AN204_RS05640 (AN204_05640)	rpoS	1143114..1144106 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AN204_RS05645 (AN204_05645)	-	1144284..1144835 (-)	552	WP_001179442.1	flavodoxin family protein	-
AN204_RS05650 (AN204_05650)	-	1145060..1146103 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AN204_RS05655 (AN204_05655)	ygbN	1146246..1147610 (-)	1365	WP_000104443.1	GntP family transporter	-
AN204_RS05660 (AN204_05660)	ygbM	1147699..1148475 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=135144 AN204_RS05640 WP_000081550.1 1143114..1144106(+) (rpoS) [Escherichia coli strain SF-166]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=135144 AN204_RS05640 WP_000081550.1 1143114..1144106(+) (rpoS) [Escherichia coli strain SF-166]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715