Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AN205_RS09290 Genome accession   NZ_CP012631
Coordinates   1891497..1891973 (-) Length   158 a.a.
NCBI ID   WP_001298074.1    Uniprot ID   -
Organism   Escherichia coli strain SF-173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1886497..1896973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN205_RS09245 (AN205_09255) sbmC 1886983..1887456 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  AN205_RS09250 (AN205_09260) yeeA 1887654..1888712 (+) 1059 WP_001200890.1 FUSC family protein -
  AN205_RS09255 (AN205_09265) tmaR 1888884..1889213 (+) 330 WP_000450409.1 DUF496 family protein -
  AN205_RS29505 (AN205_09270) - 1889314..1889496 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AN205_RS29215 - 1889616..1889696 (+) 81 WP_023441679.1 hypothetical protein -
  AN205_RS28890 (AN205_09275) - 1889985..1890065 (-) 81 Protein_1787 hypothetical protein -
  AN205_RS09270 (AN205_09280) yeeW 1890111..1890305 (-) 195 WP_000988601.1 DUF5983 family protein -
  AN205_RS09275 (AN205_09285) cbtA 1890302..1890676 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AN205_RS09280 (AN205_09290) cbeA 1890765..1891133 (-) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AN205_RS09285 (AN205_09295) yeeT 1891207..1891428 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  AN205_RS09290 (AN205_09300) radC 1891497..1891973 (-) 477 WP_001298074.1 RadC family protein Machinery gene
  AN205_RS09295 (AN205_09305) - 1891988..1892461 (-) 474 WP_000855071.1 antirestriction protein -
  AN205_RS09300 (AN205_09310) - 1892724..1893545 (-) 822 WP_001234570.1 DUF932 domain-containing protein -
  AN205_RS09305 (AN205_09315) - 1893766..1894176 (-) 411 WP_000846704.1 hypothetical protein -
  AN205_RS09310 (AN205_09320) - 1894192..1894869 (-) 678 WP_001362823.1 hypothetical protein -
  AN205_RS09315 (AN205_09325) - 1895005..1896075 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.28 Da        Isoelectric Point: 7.2519

>NTDB_id=135071 AN205_RS09290 WP_001298074.1 1891497..1891973(-) (radC) [Escherichia coli strain SF-173]
MQQISFLPGEMTPGERSHILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=135071 AN205_RS09290 WP_001298074.1 1891497..1891973(-) (radC) [Escherichia coli strain SF-173]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCACATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399