Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AN205_RS09235 Genome accession   NZ_CP012631
Coordinates   1884063..1885490 (-) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli strain SF-173     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879063..1890490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN205_RS09210 (AN205_09220) yefM 1879980..1880231 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AN205_RS09215 (AN205_09225) yoeB 1880228..1880482 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AN205_RS09220 (AN205_09230) yeeZ 1880565..1881389 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  AN205_RS09225 (AN205_09235) yeeY 1881435..1882364 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  AN205_RS28360 yoeI 1882579..1882641 (+) 63 WP_010723108.1 membrane protein YoeI -
  AN205_RS09230 (AN205_09240) plaP 1882631..1883989 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  AN205_RS09235 (AN205_09245) sbcB 1884063..1885490 (-) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  AN205_RS09240 (AN205_09250) dacD 1885699..1886864 (+) 1166 Protein_1781 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AN205_RS09245 (AN205_09255) sbmC 1886983..1887456 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  AN205_RS09250 (AN205_09260) yeeA 1887654..1888712 (+) 1059 WP_001200890.1 FUSC family protein -
  AN205_RS09255 (AN205_09265) tmaR 1888884..1889213 (+) 330 WP_000450409.1 DUF496 family protein -
  AN205_RS29505 (AN205_09270) - 1889314..1889496 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AN205_RS29215 - 1889616..1889696 (+) 81 WP_023441679.1 hypothetical protein -
  AN205_RS28890 (AN205_09275) - 1889985..1890065 (-) 81 Protein_1787 hypothetical protein -
  AN205_RS09270 (AN205_09280) yeeW 1890111..1890305 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=135070 AN205_RS09235 WP_000980617.1 1884063..1885490(-) (sbcB) [Escherichia coli strain SF-173]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=135070 AN205_RS09235 WP_000980617.1 1884063..1885490(-) (sbcB) [Escherichia coli strain SF-173]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581