Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG61_RS16360 Genome accession   NZ_CP010213
Coordinates   3110262..3110891 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3099184..3122065 3110262..3110891 within 0


Gene organization within MGE regions


Location: 3099184..3122065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG61_RS16295 (RG61_15520) - 3099184..3100203 (+) 1020 WP_073519722.1 tyrosine-type recombinase/integrase -
  RG61_RS16300 (RG61_15525) yccA 3100611..3101270 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  RG61_RS16305 (RG61_15530) tusE 3101361..3101690 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  RG61_RS16310 (RG61_15535) yccX 3101687..3101965 (-) 279 WP_000048252.1 acylphosphatase -
  RG61_RS16315 (RG61_15540) rlmI 3102060..3103250 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  RG61_RS16320 (RG61_15545) hspQ 3103308..3103625 (+) 318 WP_001358373.1 heat shock protein HspQ -
  RG61_RS16325 (RG61_15550) yccU 3103670..3104083 (-) 414 WP_001301418.1 CoA-binding protein -
  RG61_RS16335 (RG61_15560) csgI 3104256..3104918 (+) 663 WP_000847783.1 DUF2057 family protein -
  RG61_RS16340 (RG61_15565) mgsA 3105014..3105472 (+) 459 WP_000424181.1 methylglyoxal synthase -
  RG61_RS16345 (RG61_15570) helD 3105504..3107558 (-) 2055 WP_000420533.1 DNA helicase IV -
  RG61_RS16350 (RG61_15575) yccF 3107681..3108127 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG61_RS16355 (RG61_15580) yccS 3108137..3110299 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RG61_RS16360 (RG61_15585) sxy/tfoX 3110262..3110891 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG61_RS16365 (RG61_15590) sulA 3111110..3111619 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG61_RS16375 (RG61_15600) ompA 3111976..3113016 (+) 1041 WP_000750416.1 porin OmpA -
  RG61_RS16380 (RG61_15605) matP 3113092..3113544 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG61_RS16385 (RG61_15610) ycbZ 3113730..3115490 (+) 1761 WP_000156526.1 AAA family ATPase -
  RG61_RS16390 (RG61_15615) fabA 3115559..3116077 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  RG61_RS16395 (RG61_15620) rmf 3116147..3116314 (-) 168 WP_000828648.1 ribosome modulation factor -
  RG61_RS16400 (RG61_15625) pqiC 3116570..3117133 (-) 564 WP_000759123.1 membrane integrity-associated transporter subunit PqiC -
  RG61_RS16405 (RG61_15630) pqiB 3117130..3118770 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  RG61_RS16410 (RG61_15635) pqiA 3118775..3120028 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  RG61_RS16415 (RG61_15640) uup 3120158..3122065 (-) 1908 WP_000053089.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=135062 RG61_RS16360 WP_000839153.1 3110262..3110891(-) (sxy/tfoX) [Escherichia coli strain M15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=135062 RG61_RS16360 WP_000839153.1 3110262..3110891(-) (sxy/tfoX) [Escherichia coli strain M15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment