Detailed information NTG0135057

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AN205_RS05230
• Genome accession: NZ_CP012631
• Coordinates: 1077279..1078271 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SF-173
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1072279..1083271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN205_RS05200 (AN205_05210)	ispD	1072340..1073050 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AN205_RS05205 (AN205_05215)	ispF	1073050..1073529 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AN205_RS05210 (AN205_05220)	truD	1073526..1074575 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
AN205_RS05215 (AN205_05225)	surE	1074556..1075317 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AN205_RS05220 (AN205_05230)	pcm	1075311..1075937 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AN205_RS05225 (AN205_05235)	nlpD	1076122..1077216 (+)	1095	WP_306305084.1	murein hydrolase activator NlpD	-
AN205_RS05230 (AN205_05240)	rpoS	1077279..1078271 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AN205_RS05235 (AN205_05245)	-	1078449..1079000 (-)	552	WP_001179442.1	flavodoxin family protein	-
AN205_RS05240 (AN205_05250)	-	1079225..1080268 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AN205_RS05245 (AN205_05255)	ygbN	1080411..1081775 (-)	1365	WP_000104443.1	GntP family transporter	-
AN205_RS05250 (AN205_05260)	ygbM	1081864..1082640 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=135057 AN205_RS05230 WP_000081550.1 1077279..1078271(+) (rpoS) [Escherichia coli strain SF-173]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=135057 AN205_RS05230 WP_000081550.1 1077279..1078271(+) (rpoS) [Escherichia coli strain SF-173]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715