Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AN205_RS00380 Genome accession   NZ_CP012631
Coordinates   76104..76772 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain SF-173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71104..81772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN205_RS00350 (AN205_00350) yicC 71123..71986 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  AN205_RS00355 (AN205_00355) rph 72113..72829 (+) 717 WP_001247093.1 ribonuclease PH -
  AN205_RS00360 (AN205_00360) pyrE 72895..73536 (+) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  AN205_RS00365 (AN205_00365) slmA 73573..74169 (-) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  AN205_RS00370 (AN205_00370) dut 74276..74734 (-) 459 WP_000976066.1 dUTP diphosphatase -
  AN205_RS00375 (AN205_00375) coaBC 74712..75932 (-) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AN205_RS00380 (AN205_00380) radC 76104..76772 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AN205_RS00385 (AN205_00385) rpmB 76989..77225 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AN205_RS00390 (AN205_00390) rpmG 77246..77413 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AN205_RS00395 (AN205_00395) mutM 77511..78320 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AN205_RS00400 (AN205_00400) coaD 78359..78838 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AN205_RS00405 (AN205_00405) waaA 78846..80123 (-) 1278 WP_042017358.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AN205_RS00410 (AN205_00410) rfaQ 80536..81594 (+) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=135036 AN205_RS00380 WP_001297375.1 76104..76772(+) (radC) [Escherichia coli strain SF-173]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=135036 AN205_RS00380 WP_001297375.1 76104..76772(+) (radC) [Escherichia coli strain SF-173]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496