Detailed information NTG0134972

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AN206_RS05695
• Genome accession: NZ_CP012625
• Coordinates: 1149853..1150845 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SF-468
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1144853..1155845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN206_RS05665 (AN206_05670)	ispD	1144914..1145624 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AN206_RS05670 (AN206_05675)	ispF	1145624..1146103 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AN206_RS05675 (AN206_05680)	truD	1146100..1147149 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
AN206_RS05680 (AN206_05685)	surE	1147130..1147891 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AN206_RS05685 (AN206_05690)	pcm	1147885..1148511 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AN206_RS05690 (AN206_05695)	nlpD	1148696..1149790 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AN206_RS05695 (AN206_05700)	rpoS	1149853..1150845 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AN206_RS05700 (AN206_05705)	-	1151023..1151574 (-)	552	WP_001179442.1	flavodoxin family protein	-
AN206_RS05705 (AN206_05710)	-	1151799..1152842 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AN206_RS05710 (AN206_05715)	ygbN	1152985..1154349 (-)	1365	WP_000104443.1	GntP family transporter	-
AN206_RS05715 (AN206_05720)	ygbM	1154438..1155214 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=134972 AN206_RS05695 WP_000081550.1 1149853..1150845(+) (rpoS) [Escherichia coli strain SF-468]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=134972 AN206_RS05695 WP_000081550.1 1149853..1150845(+) (rpoS) [Escherichia coli strain SF-468]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715