Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG56_RS04235 Genome accession   NZ_CP010186
Coordinates   843903..844532 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 838903..849532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG56_RS04210 (RG56_03930) ycbZ 839304..841064 (-) 1761 WP_000156526.1 Lon protease family protein -
  RG56_RS04215 (RG56_03935) matP 841250..841702 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG56_RS04220 (RG56_03940) ompA 841778..842818 (-) 1041 WP_000750416.1 porin OmpA -
  RG56_RS04230 (RG56_03950) sulA 843175..843684 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG56_RS04235 (RG56_03955) sxy/tfoX 843903..844532 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG56_RS04240 (RG56_03960) yccS 844495..846657 (-) 2163 WP_000875044.1 YccS family putative transporter -
  RG56_RS04245 (RG56_03965) yccF 846667..847113 (-) 447 WP_001261231.1 YccF domain-containing protein -
  RG56_RS04250 (RG56_03970) helD 847236..849290 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134939 RG56_RS04235 WP_000839153.1 843903..844532(+) (sxy/tfoX) [Escherichia coli strain M6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134939 RG56_RS04235 WP_000839153.1 843903..844532(+) (sxy/tfoX) [Escherichia coli strain M6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment