Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG52_RS21860 Genome accession   NZ_CP010177
Coordinates   4245527..4246156 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain H14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4240527..4251156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG52_RS21845 (RG52_20840) helD 4240769..4242823 (-) 2055 WP_000420533.1 DNA helicase IV -
  RG52_RS21850 (RG52_20845) yccF 4242946..4243392 (+) 447 WP_001261231.1 YccF domain-containing protein -
  RG52_RS21855 (RG52_20850) yccS 4243402..4245564 (+) 2163 WP_000875020.1 YccS family putative transporter -
  RG52_RS21860 (RG52_20855) sxy/tfoX 4245527..4246156 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG52_RS21865 (RG52_20860) sulA 4246375..4246884 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG52_RS21875 (RG52_20870) ompA 4247241..4248281 (+) 1041 WP_000750416.1 porin OmpA -
  RG52_RS21880 (RG52_20875) matP 4248357..4248809 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG52_RS21885 (RG52_20880) ycbZ 4248995..4250755 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134870 RG52_RS21860 WP_000839153.1 4245527..4246156(-) (sxy/tfoX) [Escherichia coli strain H14]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134870 RG52_RS21860 WP_000839153.1 4245527..4246156(-) (sxy/tfoX) [Escherichia coli strain H14]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment